View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0185_low_8 (Length: 324)
Name: NF0185_low_8
Description: NF0185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0185_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 30644745 - 30645025
Alignment:
| Q |
30 |
cttctgaaagagaataattagttctggtcctnnnnnnntagttttgaaaataaataaatgcatgtggtgagattatcgggacttgaatggcgtgcaagtg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30644745 |
cttctgaaagagaataattagttctggtcctaaaaaaatagttttgaaaataaataaatgcatgtggtgagattattgggacttgaatggcgtgcaagtg |
30644844 |
T |
|
| Q |
130 |
caaaatgaactaataaagtatccatccacatccagcactacacgtgcaattattttcttcttcttgctaaaaacgaactcaacttatttccagctgtgta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30644845 |
caaaatgaactaataaagtatccatccacatccagcactacacgtgcaattattttcttcttcttgctaaaaacgaactcaacttatttccagctgtgta |
30644944 |
T |
|
| Q |
230 |
cacatttggttcctacgcacaacacgccaactagtttggtcaccaccccaccagaactgagctatcttcacctataatagt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30644945 |
cacatttggttcctacgcacaacacgccaactagtttggtcaccaccccaccagaactgagctatcttcacctataatagt |
30645025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 559 times since January 2019
Visitors: 2229