View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0185_low_9 (Length: 310)

Name: NF0185_low_9
Description: NF0185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0185_low_9
NF0185_low_9
[»] chr4 (6 HSPs)
chr4 (63-245)||(28787960-28788142)
chr4 (147-245)||(24856237-24856335)
chr4 (147-242)||(24853349-24853444)
chr4 (111-245)||(51246622-51246749)
chr4 (147-235)||(28787018-28787106)
chr4 (111-245)||(17525460-17525589)
[»] scaffold0406 (1 HSPs)
scaffold0406 (147-245)||(6280-6378)
[»] chr7 (1 HSPs)
chr7 (147-245)||(22622375-22622473)
[»] chr5 (5 HSPs)
chr5 (166-245)||(5046448-5046527)
chr5 (166-245)||(5047219-5047298)
chr5 (166-245)||(5047990-5048069)
chr5 (147-204)||(5664821-5664877)
chr5 (178-238)||(5663780-5663840)
[»] chr8 (1 HSPs)
chr8 (147-237)||(1275201-1275291)
[»] chr3 (3 HSPs)
chr3 (166-245)||(12738191-12738270)
chr3 (166-245)||(12739342-12739421)
chr3 (201-245)||(15023059-15023103)
[»] chr2 (2 HSPs)
chr2 (111-245)||(20978804-20978940)
chr2 (151-239)||(33798848-33798936)
[»] chr1 (3 HSPs)
chr1 (147-245)||(22055466-22055563)
chr1 (145-245)||(29371903-29372004)
chr1 (173-245)||(22056567-22056638)
[»] scaffold0272 (1 HSPs)
scaffold0272 (147-186)||(3559-3598)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 63 - 245
Target Start/End: Complemental strand, 28788142 - 28787960
Alignment:
Q  63 gtggaggagagaatagtagtaaggataagagtacacacattagaaattaggagagaatatcatgtggtgaagccttcaatattaaatattattgacattg 162  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28788142 gtggtggagagaatagtagtaaggataagaggacacacattagaaattaggagagaatatcatgtggtgaagccttcaatattaaatattattgacattg 28788043  T
Q  163 catcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28788042 catcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatcta 28787960  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 24856335 - 24856237
Alignment:
Q  147 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||  ||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  24856335 aatattattgacattgcatcttaaaggctggaatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatcta 24856237  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 24853444 - 24853349
Alignment:
Q  147 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||| |||||| |||||||||||||||    
T  24853444 aatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaactagaataat 24853349  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 111 - 245
Target Start/End: Complemental strand, 51246749 - 51246622
Alignment:
Q  111 aggagagaatatcatgtggtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttatag 210  Q
    |||||||||||| || ||||||||||||||||||||       |||||||| ||||  ||||||||||||||||||||||||||||| ||||| ||||||    
T  51246749 aggagagaatatgatttggtgaagccttcaatatta-------ttgacattacatcccaaaggcttgaatacaattgcacccatataagtctacttatag 51246657  T
Q  211 gtgtttgaaaatgtttctagaactagaataatcta 245  Q
    ||| ||| | |||||||||||||||||||||||||    
T  51246656 gtgcttgtagatgtttctagaactagaataatcta 51246622  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 28787106 - 28787018
Alignment:
Q  147 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaacta 235  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  28787106 aatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctagaacta 28787018  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 245
Target Start/End: Original strand, 17525460 - 17525589
Alignment:
Q  111 aggagagaatatcatgtggtgaagccttcaatattaaatattattgaca--ttgcatcttaaaggcttgaatacaattgcacccatatatgtctatttat 208  Q
    |||||||||||| || ||||||||||||||||||||       ||||||  |||||||| |||||||||||||||||| ||| |||||| ||||||||||    
T  17525460 aggagagaatatgatatggtgaagccttcaatatta-------ttgacacattgcatctcaaaggcttgaatacaatttcacacatataagtctatttat 17525552  T
Q  209 aggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    | | | ||| | |||||||||||||||||||||||||    
T  17525553 aagcgcttgtagatgtttctagaactagaataatcta 17525589  T

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Target: scaffold0406 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 6378 - 6280
Alignment:
Q  147 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||||    
T  6378 aatattattgacattgcatctcaaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatcta 6280  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 22622375 - 22622473
Alignment:
Q  147 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| |||  |||| |||||||||||| ||||||||||||    
T  22622375 aatattattgacatggcatctcaaaggcttgaatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatcta 22622473  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 5046527 - 5046448
Alignment:
Q  166 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| |||||||||||||||    
T  5046527 cttaaaggcttgaatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatcta 5046448  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 5047298 - 5047219
Alignment:
Q  166 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | ||||||||| |||||||||||||||    
T  5047298 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatcta 5047219  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 5048069 - 5047990
Alignment:
Q  166 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | |||||| || |||||||||||||||    
T  5048069 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatcta 5047990  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 5664821 - 5664877
Alignment:
Q  147 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctat 204  Q
    |||||||||| ||||| || ||||| ||||||||||||||||||||||||| ||||||    
T  5664821 aatattattgtcattgtat-ttaaaagcttgaatacaattgcacccatataagtctat 5664877  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 5663780 - 5663840
Alignment:
Q  178 aatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaa 238  Q
    |||||||| |||||||||||  |||||||||| ||| ||||| ||||||||| ||||||||    
T  5663780 aatacaatcgcacccatataattctatttataagtgattgaagatgtttctaaaactagaa 5663840  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 1275201 - 1275291
Alignment:
Q  147 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactaga 237  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||  | || ||||||||| |||||  ||||||||||||||||    
T  1275201 aatattattgacattgcatcttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactaga 1275291  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 12738270 - 12738191
Alignment:
Q  166 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||| ||| | ||||||||||||||| ||| |||||    
T  12738270 cttaaaggcttgaatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatcta 12738191  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 12739421 - 12739342
Alignment:
Q  166 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||| || ||| | ||||||||||||||| |||||||||    
T  12739421 cttaaaggcttgaatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatcta 12739342  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 15023103 - 15023059
Alignment:
Q  201 ctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    ||||||||||||| ||| | ||||||||||||||| |||||||||    
T  15023103 ctatttataggtgcttgtagatgtttctagaactaaaataatcta 15023059  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 245
Target Start/End: Original strand, 20978804 - 20978940
Alignment:
Q  111 aggagagaatatcatgtggtgaagccttcaatattaaatattattgacattgcatct--------taaaggcttgaatacaattgcacccatatatgtct 202  Q
    |||||||||||| || ||||||||||||||||||||       ||||||||||||||        |||||||||||||| ||| ||||||||||| || |    
T  20978804 aggagagaatatgatatggtgaagccttcaatatta-------ttgacattgcatctcaaaggtttaaaggcttgaatataatggcacccatataagttt 20978896  T
Q  203 atttataggt-gtttgaaaatgtttctagaactagaataatcta 245  Q
    ||||||||||  |||| | |||||||||||||||||||||||||    
T  20978897 atttataggtactttgtagatgtttctagaactagaataatcta 20978940  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 33798848 - 33798936
Alignment:
Q  151 ttattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaat 239  Q
    |||||||| || ||||| ||||||||||||||||||||||  ||   | ||||||||||| |  ||||| |||||||||||| ||||||    
T  33798848 ttattgacgttacatctcaaaggcttgaatacaattgcacatatgcttatctatttatagatccttgaagatgtttctagaagtagaat 33798936  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 22055466 - 22055563
Alignment:
Q  147 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||  |  | ||||||||||| ||| ||||| ||| ||||||||||| |||||||||    
T  22055466 aatattatcgacattgcatctgaaaggcttgactacaattgcaccattcca-gtctatttataagtgcttgaagatgattctagaactaaaataatcta 22055563  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 29372004 - 29371903
Alignment:
Q  145 taaatattattgacattgcatcttaaaggcttgaatacaatt-gcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatc 243  Q
    ||||| || |||| |||| |||||||||||||  |||||||| |||||||||||  |||||||||| ||| ||||| |||||| ||  ||| ||||||||    
T  29372004 taaatgttcttgatattgtatcttaaaggcttacatacaatttgcacccatataaatctatttataagtgcttgaagatgtttataatacttgaataatc 29371905  T
Q  244 ta 245  Q
    ||    
T  29371904 ta 29371903  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 22056567 - 22056638
Alignment:
Q  173 gcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 245  Q
    |||||||| ||||||||||  | || |||| |||||||||| ||||| || ||||||||||||||||||||||    
T  22056567 gcttgaatgcaattgcaccttt-taagtctctttataggtgcttgaagatatttctagaactagaataatcta 22056638  T

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Target: scaffold0272 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 3559 - 3598
Alignment:
Q  147 aatattattgacattgcatcttaaaggcttgaatacaatt 186  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  3559 aatattattgacattgcatctcaaaggtttgaatacaatt 3598  T

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