View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0186_high_1 (Length: 885)

Name: NF0186_high_1
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0186_high_1
NF0186_high_1
[»] scaffold0018 (5 HSPs)
scaffold0018 (83-547)||(75078-75555)
scaffold0018 (679-868)||(75651-75840)
scaffold0018 (491-634)||(75460-75603)
scaffold0018 (778-868)||(76028-76118)
scaffold0018 (778-868)||(76306-76396)
[»] chr1 (1 HSPs)
chr1 (83-466)||(32620165-32620539)
[»] chr5 (5 HSPs)
chr5 (83-363)||(21974025-21974311)
chr5 (679-868)||(21974626-21974816)
chr5 (465-634)||(21974409-21974578)
chr5 (396-562)||(21974309-21974467)
chr5 (463-508)||(21974485-21974530)
[»] chr3 (5 HSPs)
chr3 (83-363)||(44479867-44480153)
chr3 (679-868)||(44479362-44479552)
chr3 (465-634)||(44479600-44479769)
chr3 (396-562)||(44479711-44479869)
chr3 (463-508)||(44479648-44479693)


Alignment Details
Target: scaffold0018 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 83 - 547
Target Start/End: Original strand, 75078 - 75555
Alignment:
Q  83 gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat 182  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  75078 gaacctgtgcagtggggttgacagctgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactggtct 75177  T
Q  183 gtacggaagagactgtgtaggtggcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatcagtattt 282  Q
    | | |||||||| |||| ||||||||||||||||| | ||   ||||||||||| | ||||||| |||||||||| |||||||||||||| ||||| |||    
T  75178 ggaaggaagagaatgtgcaggtggcttgaatttacctatgcacatagcagatttcaccagcttccttttcttattcccatttacccccacttcagtgttt 75277  T
Q  283 gttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagttaatatacatcagcatata 382  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  75278 gttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagtgaacatacatcagcatata 75377  T
Q  383 -taat-aagcaatttag-tagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttga-----------acttt-accaacttg 467  Q
     |  | ||||||||||| ||||||||||| |||||||||||  ||||| |||||||||||||||||||||||||           ||||| ||    |||    
T  75378 gtgctcaagcaatttagttagcatataataaacaaattagt--agcatataataaacaatttaccttcctttgattagttcctccactttgacttgtttg 75475  T
Q  468 agtttgaactggattagtcccctcactttgacttgcttgagtttgaactggattggtctcctcactttgacttgcttgag 547  Q
    ||| |||||||||||   |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  75476 agtctgaactggattgacccccccactttgacttgcttcagtttgaactggattggtctccccactttgacttgcttgag 75555  T

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Target: scaffold0018; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 679 - 868
Target Start/End: Original strand, 75651 - 75840
Alignment:
Q  679 caaattttaaagtaatatagttacaaataaactgacaagaaatatgatcaatattttgacagcagtaaaatacctttcttttttgtgcttcagggttcac 778  Q
    |||||| ||||  |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  75651 caaattataaatcaatatagttagagataaactgacaagaaatatgatcaatattttgacagaagtaaaatacctttctcttttgtgcttcagggttcac 75750  T
Q  779 tgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccaca 868  Q
    |||||||| ||| |||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  75751 tgtctgacttttgcaacctctggcattgtgaccacaactcccacatgttgtgcacttgtacttactagcacctctgctaaatttcccaca 75840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 491 - 634
Target Start/End: Original strand, 75460 - 75603
Alignment:
Q  491 cactttgacttgcttgagtttgaactggattggtctcctcactttgacttgcttgagtttgaactggattggtctcctcaatttcacttgcttgagcact 590  Q
    |||||||||||| |||||| ||||||||||||  | || ||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||    
T  75460 cactttgacttgtttgagtctgaactggattgacccccccactttgacttgcttcagtttgaactggattggtctccccactttgacttgcttgagcact 75559  T
Q  591 ttgggtttcatgttgagcagactgttcttgagagacttgagcac 634  Q
    ||| ||||||||||||||||||||||||||||||||||||||||    
T  75560 ttgtgtttcatgttgagcagactgttcttgagagacttgagcac 75603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 778 - 868
Target Start/End: Original strand, 76028 - 76118
Alignment:
Q  778 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccaca 868  Q
    ||||||||| ||| ||||||||  ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  76028 ctgtctgacttttgcaacctctgccattgtgaccacagctcccacatgttgtgcacttgtacttactagcacctctgctaaatttcccaca 76118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 778 - 868
Target Start/End: Original strand, 76306 - 76396
Alignment:
Q  778 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccaca 868  Q
    ||||||||| ||| ||||||||  ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  76306 ctgtctgacttttgcaacctctgccattgtgaccacagctcccacatgttgtgcacttgtacttactagcacctctgctaaatttcccaca 76396  T

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Target: chr1 (Bit Score: 195; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 83 - 466
Target Start/End: Complemental strand, 32620539 - 32620165
Alignment:
Q  83 gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat 182  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |    
T  32620539 gaacctgtgcagtggggttgacagctgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgattggagctttaactggtct 32620440  T
Q  183 gtacggaagagactgtgtaggtg------gcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatca 276  Q
    | | |||||||| |||| |||||      ||||||||||||  |||   ||||||||||||| ||||||| ||||||||||  ||||||||||||| |||    
T  32620439 ggaaggaagagaatgtgcaggtgcaggtggcttgaatttaccattgcacatagcagatttaaccagcttccttttcttattctcatttacccccacttca 32620340  T
Q  277 gtatttgttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagttaatatacatcag 376  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||           ||    
T  32620339 gtgtttgttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttaagttgatgtttttctctgtcaaagt-----------ag 32620251  T
Q  377 catatataataagcaatttagtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaactt 466  Q
    |  ||||||||| ||| ||||| ||||||||| |||||||||||  ||||| ||||||||||||||||||||||||||||||| ||||||    
T  32620250 c--atataataaacaaattagttgcatataataaacaaattagt--agcatataataaacaatttaccttcctttgaactttatcaactt 32620165  T

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Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 83 - 363
Target Start/End: Original strand, 21974025 - 21974311
Alignment:
Q  83 gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat 182  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |    
T  21974025 gaacctgtgcagtggggttgacagttgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgattggagctttaactggtct 21974124  T
Q  183 gtacggaagagactgtgtaggtg------gcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatca 276  Q
    | | |||||||| |||| |||||      ||||||||||||  |||   ||||||||||||| ||||||| |||||||||| |||||||||||||| |||    
T  21974125 ggaaggaagagaatgtgcaggtgcaggtggcttgaatttaccattgcacatagcagatttaaccagcttccttttcttattcccatttacccccacttca 21974224  T
Q  277 gtatttgttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagt 363  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21974225 gtgtttgttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagt 21974311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 679 - 868
Target Start/End: Original strand, 21974626 - 21974816
Alignment:
Q  679 caaattttaaagtaatatagttacaaataaactgacaagaaatat-gatcaatattttgacagcagtaaaatacctttcttttttgtgcttcagggttca 777  Q
    |||||| ||||  |||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  21974626 caaattataaatcaatatagttagagataaactgacaagaaatattgatcaatattttgacagaagtaaaatacctttcttttttgtgcttctgggttca 21974725  T
Q  778 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccaca 868  Q
     |||||||| ||| |||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21974726 ttgtctgacttttgcaacctctagcattgtgaccacaactcccacatcttgtgcacttgtacttactagcacctctgctaaatttcccaca 21974816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 465 - 634
Target Start/End: Original strand, 21974409 - 21974578
Alignment:
Q  465 ttgagtttgaactggattagtcccctcactttgacttgcttgagtttgaactggattggtctcctcactttgacttgcttgagtttgaactggattggtc 564  Q
    |||||| |||| |||||| | |||| ||||||||||||||| | ||||||||||||||| | |  ||||||||||| ||| |||||||||||||||||||    
T  21974409 ttgagtctgaattggattggcccccccactttgacttgcttcaatttgaactggattggcccctccactttgacttacttcagtttgaactggattggtc 21974508  T
Q  565 tcctcaatttcacttgcttgagcactttgggtttcatgttgagcagactgttcttgagagacttgagcac 634  Q
    ||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21974509 tccccactttgacttgcttgagcactttgtgtttcatgttgagcagactgttcttgagagacttgagcac 21974578  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 396 - 562
Target Start/End: Original strand, 21974309 - 21974467
Alignment:
Q  396 agtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaacttgagtttgaactggattagtcccctcactt 495  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||  ||||      |||||||  |   ||||    
T  21974309 agtagcatataataaacaaattagtag--catataataaacaatttaccttcctttgaactttatcaacttttgttt------gattagtatcaaaactt 21974400  T
Q  496 tgacttgcttgagtttgaactggattggtctcctcactttgacttgcttgagtttgaactggattgg 562  Q
    ||||||| |||||| |||| |||||||| | || ||||||||||||||| | |||||||||||||||    
T  21974401 tgacttgtttgagtctgaattggattggcccccccactttgacttgcttcaatttgaactggattgg 21974467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 508
Target Start/End: Original strand, 21974485 - 21974530
Alignment:
Q  463 acttgagtttgaactggattagtcccctcactttgacttgcttgag 508  Q
    |||| ||||||||||||||| ||| || ||||||||||||||||||    
T  21974485 acttcagtttgaactggattggtctccccactttgacttgcttgag 21974530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 83 - 363
Target Start/End: Complemental strand, 44480153 - 44479867
Alignment:
Q  83 gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat 182  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |    
T  44480153 gaacctgtgcagtggggttgacagttgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgattggagctttaactggtct 44480054  T
Q  183 gtacggaagagactgtgtaggtg------gcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatca 276  Q
    | | |||||||| |||| |||||      ||||||||||||  |||   ||||||||||||| ||||||| |||||||||| |||||||||||||| |||    
T  44480053 ggaaggaagagaatgtgcaggtgcaggtggcttgaatttaccattgcacatagcagatttaaccagcttccttttcttattcccatttacccccacttca 44479954  T
Q  277 gtatttgttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagt 363  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44479953 gtgtttgttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttgagttgatgtttttctctgtcaaagt 44479867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 679 - 868
Target Start/End: Complemental strand, 44479552 - 44479362
Alignment:
Q  679 caaattttaaagtaatatagttacaaataaactgacaagaaatat-gatcaatattttgacagcagtaaaatacctttcttttttgtgcttcagggttca 777  Q
    |||||| ||||  |||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  44479552 caaattataaatcaatatagttagagataaactgacaagaaatattgatcaatattttgacagaagtaaaatacctttcttttttgtgcttctgggttca 44479453  T
Q  778 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccaca 868  Q
     |||||||| ||| |||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44479452 ttgtctgacttttgcaacctctagcattgtgaccacaactcccacatcttgtgcacttgtacttactagcacctctgctaaatttcccaca 44479362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 465 - 634
Target Start/End: Complemental strand, 44479769 - 44479600
Alignment:
Q  465 ttgagtttgaactggattagtcccctcactttgacttgcttgagtttgaactggattggtctcctcactttgacttgcttgagtttgaactggattggtc 564  Q
    |||||| |||| |||||| | |||| ||||||||||||||| | ||||||||||||||| | |  ||||||||||| ||| |||||||||||||||||||    
T  44479769 ttgagtctgaattggattggcccccccactttgacttgcttcaatttgaactggattggcccctccactttgacttacttcagtttgaactggattggtc 44479670  T
Q  565 tcctcaatttcacttgcttgagcactttgggtttcatgttgagcagactgttcttgagagacttgagcac 634  Q
    ||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44479669 tccccactttgacttgcttgagcactttgtgtttcatgttgagcagactgttcttgagagacttgagcac 44479600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 396 - 562
Target Start/End: Complemental strand, 44479869 - 44479711
Alignment:
Q  396 agtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaacttgagtttgaactggattagtcccctcactt 495  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||  ||||      |||||||  |   ||||    
T  44479869 agtagcatataataaacaaattagtag--catataataaacaatttaccttcctttgaactttatcaacttttgttt------gattagtatcaaaactt 44479778  T
Q  496 tgacttgcttgagtttgaactggattggtctcctcactttgacttgcttgagtttgaactggattgg 562  Q
    ||||||| |||||| |||| |||||||| | || ||||||||||||||| | |||||||||||||||    
T  44479777 tgacttgtttgagtctgaattggattggcccccccactttgacttgcttcaatttgaactggattgg 44479711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 508
Target Start/End: Complemental strand, 44479693 - 44479648
Alignment:
Q  463 acttgagtttgaactggattagtcccctcactttgacttgcttgag 508  Q
    |||| ||||||||||||||| ||| || ||||||||||||||||||    
T  44479693 acttcagtttgaactggattggtctccccactttgacttgcttgag 44479648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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