View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0186_high_12 (Length: 336)
Name: NF0186_high_12
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0186_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 322
Target Start/End: Original strand, 52071745 - 52072037
Alignment:
| Q |
30 |
atctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacctgcatggcataaatatatttacaaaaacatgaaggnnnnn |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52071745 |
atctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacctgcatggcataaatatatttacaaaaacatgaaggaaaaa |
52071844 |
T |
|
| Q |
130 |
nntataagcaaacaaaagtgtgtcattgatgatctatgtaagaagatacataattaatgaacctgctcttttgggaaggtttctccattttccttcacca |
229 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52071845 |
aatataagcaaacaaaagtgcgtcattgatgatctatgtaagaagatacataattaatgaacctgctcttttgggaaggtttctccattttccttcacca |
52071944 |
T |
|
| Q |
230 |
tggagcttaatgtagtctgagagaattttgtcttcatgagctgtccaagcacctctgttcaatccctcctttgcacaacaaggacttctcccc |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52071945 |
tggagcttaatgtagtctgagagaattttgtcttcatgagctgtccaagcacctctgttcaatccctcctttgcacaacaaggacttctcccc |
52072037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 9621993 - 9621943
Alignment:
| Q |
30 |
atctggtcttagataattcaaccatctaagtctacaactttttccacatct |
80 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||| |||||||| |
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|
| T |
9621993 |
atctggtctaagataattcatccatctaagtctacaacttttcccacatct |
9621943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 5843125 - 5843176
Alignment:
| Q |
29 |
aatctggtcttagataattcaaccatctaagtctacaactttttccacatct |
80 |
Q |
| |
|
|||| |||||||||||||| | |||||| | ||||||||||||||||||||| |
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|
| T |
5843125 |
aatcaggtcttagataatttatccatcttaatctacaactttttccacatct |
5843176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 5849867 - 5849918
Alignment:
| Q |
29 |
aatctggtcttagataattcaaccatctaagtctacaactttttccacatct |
80 |
Q |
| |
|
|||| |||||||||||||| | |||||| | ||||||||||||||||||||| |
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|
| T |
5849867 |
aatcaggtcttagataatttatccatcttaatctacaactttttccacatct |
5849918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 7195402 - 7195365
Alignment:
| Q |
40 |
agataattcaaccatctaagtctacaactttttccaca |
77 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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|
| T |
7195402 |
agataattcaaccatctttgtctacaactttttccaca |
7195365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 48892626 - 48892676
Alignment:
| Q |
30 |
atctggtcttagataattcaaccatctaagtctacaactttttccacatct |
80 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||| ||||||||||||||||| |
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|
| T |
48892626 |
atctggtcttagatagttcatccatcttagtctgcaactttttccacatct |
48892676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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