View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0186_high_14 (Length: 331)
Name: NF0186_high_14
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0186_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 40174633 - 40174934
Alignment:
| Q |
1 |
ggaggaccacctggtctctgcccaaattgccccggcggcataggaggcggtggacccctcaccatctgcggtggaccttgtccaggatgtccaggatacg |
100 |
Q |
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| T |
40174633 |
ggaggaccacctggtctctgcccaaattgccccggcggcataggaggcggtggacccctcaccatctgcggtggaccttgtccaggatgtccaggatacg |
40174732 |
T |
|
| Q |
101 |
gcatttgaccaggcggacgcataacaggcggaccaccaggatacgaaacaggtggccgcgagatctgcggctgcatcataccaggagcaggtccaccaac |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40174733 |
gcatttgaccaggtggacgcataacaggcggaccaccaggatacgaaacaggcggccgcgagatctgcggctgcatcataccaggagcaggtccaccaac |
40174832 |
T |
|
| Q |
201 |
accacgaacaggaccagcaagaccaggctgagcttgaataaccggcgccggaggaatacctctaccagcagcacgtccaattccaggaccagccattgca |
300 |
Q |
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| T |
40174833 |
accacgaacaggaccagcaagaccaggctgagcttgaataaccggcgccggaggaatacctctaccagcagcacgtccaattccaggaccagccattgca |
40174932 |
T |
|
| Q |
301 |
gc |
302 |
Q |
| |
|
|| |
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| T |
40174933 |
gc |
40174934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 94 - 302
Target Start/End: Complemental strand, 34400900 - 34400686
Alignment:
| Q |
94 |
ggatacggcatttgaccaggcgg---acgcataacaggcggaccaccaggatacgaaacaggtggccgcgagatctgcggctgcatcataccaggagcag |
190 |
Q |
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||||| ||||| ||||||||||| ||||||||| ||||||||||| ||||||||||| || || |||||||| ||||||||||||||||||||||||| |
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| T |
34400900 |
ggatatggcatctgaccaggcggtggacgcataaccggcggaccaccgggatacgaaaccggaggacgcgagatttgcggctgcatcataccaggagcag |
34400801 |
T |
|
| Q |
191 |
gtccaccaacaccacgaacaggaccagcaagaccaggctgagcttgaataaccggcgcc---ggaggaatacctctaccagcagcacgtccaattccagg |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
34400800 |
gtccaccaacaccacgaacaggaccagcaagaccaggctgagcttgaataactgtcgccggaggaggaatacctcttccagcagcacgaccaattccagg |
34400701 |
T |
|
| Q |
288 |
accagccattgcagc |
302 |
Q |
| |
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||||||||||||||| |
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|
| T |
34400700 |
accagccattgcagc |
34400686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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