View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0186_high_16 (Length: 313)
Name: NF0186_high_16
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0186_high_16
[» ] chr3 (1 HSPs)
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 313
Target Start/End: Original strand, 29056990 - 29057277
Alignment:
Q
27
gttgttatcggtggtggcggagttaagcgtagccgtggccattgaaggaaggttctagaagtcgtggagaacagcgcgcgagagtttcaagagagtggtg
126
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
29056990
gttgttatcggtggtggcggagttaagcgtagccgtggccattgaaggaaggttctagaagtcgtggagaatagcgcgcgagagtttcaagagagtggtg
29057089
T
Q
127
gtggtttaatcggttatgatgaggcgggggaagagatcgatggggtttgtgtttttggctgtttgtaatttggaattggattttttccacggttaaacac
226
Q
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||| |||| ||
T
29057090
gtggtttaatcggttatgatgaggcggttgaagagatcgatggtgtttgtgttttggactgtttgtaatttggaattggatttttcccacgtttaagca-
29057188
T
Q
227
cggat-tggtccgt-cgattttaaatgggtactttagatcatttatgggtaaatttgtggttggaaatattaattgtttgttttcatat
313
Q
||||| |||||||| |||||| |||||| ||||| |||||||||||| ||||| ||||| |||||||||| ||||||||| | ||||||
T
29057189
cggatctggtccgtccgatttcaaatggatacttgagatcatttatgcgtaaaattgtgtttggaaatatgaattgtttgatctcatat
29057277
T
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Alignment Overview ]
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