View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0186_high_2 (Length: 650)
Name: NF0186_high_2
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0186_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 3016454 - 3017078
Alignment:
| Q |
1 |
ttccagggagcctatgaaataaaaaatagaaagaattgcttatacctagatgctttttcactttgtttcttctgcctttgttggatagtcactttgttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016454 |
ttccagggagcctatgaaataaaaaatagaaagaattgtttatacctagatgctttttcactttgtttcttctgcctttgttggatagtcactttgttgt |
3016553 |
T |
|
| Q |
101 |
agaagtaggtctcaagagtcaaaacaatggttgaccaaaatattaatcacatgtgcttgatattgcannnnnnnncttggaactgcagcaagttggaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3016554 |
agaagtaggtctcaagagtcaaaacaatggttgaccaaaatattaatcacatgtgcttgatattgcattttttt-cttggaactgcagcaagttggaaag |
3016652 |
T |
|
| Q |
201 |
agcttatcaaaggttgaacaatcaccttctaagtccattcaaaaagcactctctccatcattgaaagcattgatttctgataaacttataaagcattcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016653 |
agcttatcaaaggttgaacaatcaccttctaagtccattcaaaaagcactctctccatcattgaaagcattgatttctgataaacttataaagcattcag |
3016752 |
T |
|
| Q |
301 |
atgttggtgtcaaagttgcccttgcctcctgcttgagtgagttaacaagaatcactgcacccgatggtccttacaatgatcaccaaatgaaggtgtgctt |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3016753 |
atgttggtgtcaaagttgcccttgcctcctgcttgagtgagttaacaagaatcactgcacctgatggtccttacaatgatcaccaaatgaaggtgtgctt |
3016852 |
T |
|
| Q |
401 |
gataannnnnnnngtacattaattgaattctattctattatcatgttcttaacaagttatgtctgttgagttatatggtgtcannnnnnnnncaggaggt |
500 |
Q |
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| T |
3016853 |
gataattttttttgtacattaattgaattctattctattatcatgttcttaacaagttatgtctgttgagttatatggtgtca-ttttctttcaggaggt |
3016951 |
T |
|
| Q |
501 |
cttgagattaattgtatcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcagg |
600 |
Q |
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| T |
3016952 |
cttgagattaattgtatcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagttgcaaaagtcagg |
3017051 |
T |
|
| Q |
601 |
ttatgtgtggtaatgctggatcttgaa |
627 |
Q |
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| T |
3017052 |
ttatgtgtggtaatgctggatcttgaa |
3017078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 176 - 627
Target Start/End: Original strand, 3032368 - 3032814
Alignment:
| Q |
176 |
cttggaactgcagcaagttggaaagagcttatcaaaggttgaacaatcaccttctaagtccattcaaaaagcactctctccatcattgaaagcattgatt |
275 |
Q |
| |
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|||||||||||||||| ||| || || |||||| |||||||||||||||| || | || || | ||| ||||| |||||||||||||||||||| ||| |
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| T |
3032368 |
cttggaactgcagcaaattgaaagctgcctatcaagggttgaacaatcacctcctgaatctatgctaaatgcactgtctccatcattgaaagcattaatt |
3032467 |
T |
|
| Q |
276 |
tctgataaacttataaagcattcagatgttggtgtcaaagttgcccttgcctcctgcttgagtgagttaacaagaatcactgcacccgatggtccttaca |
375 |
Q |
| |
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| T |
3032468 |
gctgataaacttataaagcattcagatgctgatgtcaaagtggctcttgcctcctgcttcagtgagataacaagaatcactgcacctgatgctccttatg |
3032567 |
T |
|
| Q |
376 |
atgatcaccaaatgaaggtgtgcttgataannnnnnnngtacattaattgaattctattctattatcatgttcttaacaagttatgtctgttgagttata |
475 |
Q |
| |
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||||| |||||||||||| || || | || | ||| | |||| |||||||||||||| |||||||| ||| ||||||||||| || |
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| T |
3032568 |
atgatggtcaaatgaaggtgcgcacaatga----ttttgtgctataaattaattgaattctattatcatgctcttaacatattacatctgttgagtttta |
3032663 |
T |
|
| Q |
476 |
tggtgtcannnnnnnnncaggaggtcttgagattaattgtatcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaat |
575 |
Q |
| |
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|| ||||| ||||||||||| || |||||||||||||| ||||||||||||||||||| ||||||||| ||||| || |||| || ||| |
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| T |
3032664 |
tgttgtca-ttttctttcaggaggtctttaggttaattgtatcttcatttgaaaatctacatgataagtcaagccgatggtactcaaagaggactttaat |
3032762 |
T |
|
| Q |
576 |
ccttgaaacagtcgcaaaagtcaggttatgtgtggtaatgctggatcttgaa |
627 |
Q |
| |
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||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
3032763 |
cctcgaaacagttgcaaaagtcaggtcatgtgtggtaatgctggatcttgaa |
3032814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 626
Target Start/End: Complemental strand, 48970027 - 48969908
Alignment:
| Q |
507 |
attaattgtatcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcaggttatgt |
606 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| || |||||| | |||||| | |||| | |||| ||||| || ||||| ||||| | |||| |
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| T |
48970027 |
attaattgtatcttcatttgaaaatctacatgataagttaagccgatcgtatgagaataggagaatagtcctcgaaactgttgcaaaggtcagatcatgt |
48969928 |
T |
|
| Q |
607 |
gtggtaatgctggatcttga |
626 |
Q |
| |
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||||||||| |||| ||||| |
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|
| T |
48969927 |
gtggtaatgttggaccttga |
48969908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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