View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0186_low_18 (Length: 321)
Name: NF0186_low_18
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0186_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 29 - 309
Target Start/End: Complemental strand, 51729436 - 51729154
Alignment:
| Q |
29 |
aaaaattctacctcagatgtaaattttgcatgagaaaagtttcactgagaaatctcagttgaagaaaattgaatatgcacaaactaaagaaaaagagaga |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51729436 |
aaaaattctacctcagatgtaaattttgcatgagaaaagcttcactgagaaatctcagttgaagaaaattgaatatccacaaactaaagaaaaagagaga |
51729337 |
T |
|
| Q |
129 |
aagattac--acaatagtgtcaaaagtaatcaaagaagaattccacatttccatacatagatatgaaacatactttggaagcacgnnnnnnntcctgatt |
226 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51729336 |
aagattacagacaatagtgtcaaaagtaatcaaagaagaattccacatttccatacatagatatgaaacatactttggaagcacgaaaaaaatcctgatt |
51729237 |
T |
|
| Q |
227 |
tacagcataactctcatttctttttcgacaactttgggcctcaagtttcaactttcaccacccagtgagcatacctaggttca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729236 |
tacagcataactctcatttctttttcgacaactttgggcctcaagtttcaactttcaccacccagtgagcatacctaggttca |
51729154 |
T |
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