View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0186_low_22 (Length: 262)

Name: NF0186_low_22
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0186_low_22
NF0186_low_22
[»] chr6 (17 HSPs)
chr6 (32-238)||(33285416-33285622)
chr6 (33-197)||(33262449-33262610)
chr6 (33-197)||(33304307-33304468)
chr6 (33-197)||(33644564-33644725)
chr6 (32-192)||(28870198-28870355)
chr6 (117-197)||(33398958-33399038)
chr6 (110-197)||(9166649-9166736)
chr6 (117-197)||(33271690-33271776)
chr6 (102-197)||(33409861-33409956)
chr6 (33-189)||(33387977-33388130)
chr6 (117-197)||(33057470-33057550)
chr6 (117-163)||(33358800-33358846)
chr6 (33-72)||(33271618-33271657)
chr6 (33-72)||(33409801-33409840)
chr6 (33-75)||(9166584-9166626)
chr6 (33-67)||(33398895-33398929)
chr6 (33-74)||(33057401-33057442)
[»] scaffold1408 (1 HSPs)
scaffold1408 (33-197)||(467-628)
[»] scaffold0428 (1 HSPs)
scaffold0428 (33-197)||(6213-6374)
[»] chr4 (8 HSPs)
chr4 (35-197)||(31479032-31479191)
chr4 (110-197)||(31157123-31157210)
chr4 (117-193)||(31148192-31148268)
chr4 (110-197)||(31472571-31472661)
chr4 (35-74)||(31499199-31499238)
chr4 (35-73)||(31472695-31472733)
chr4 (117-190)||(31504224-31504297)
chr4 (35-74)||(31148122-31148161)
[»] chr2 (2 HSPs)
chr2 (117-197)||(17440904-17440984)
chr2 (33-75)||(17441011-17441053)
[»] chr7 (1 HSPs)
chr7 (35-67)||(6785526-6785558)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 33285416 - 33285622
Alignment:
Q  32 aatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33285416 aatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatc 33285515  T
Q  132 catgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaattgtgtaacttttctaggaaaaaggtcatgaaact 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33285516 catgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaattgtgtaacttttctagtaaaaaggtcatgaaact 33285615  T
Q  232 tgttgtt 238  Q
    |||||||    
T  33285616 tgttgtt 33285622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 33262449 - 33262610
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaatcccttc-aaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatc 131  Q
    |||||||||||||||||| |||||||| ||||||| |||| | | || ||||||| |    |||||  | ||||||||||| || ||||||||| || ||    
T  33262449 atccaacttggtatttcatttcctggactaacaatttgaaactcatccaaataagta----gggtaggattgttggtatgcttgaatgaattgtgtcgtc 33262544  T
Q  132 catgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  33262545 catgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaccaat 33262610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 33304307 - 33304468
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatcc 132  Q
    |||||| ||||||||||| |||||||||||||||| |||||||  |||||   ||||| ||||||  | |||  || |||||  ||||||||| ||| ||    
T  33304307 atccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaa---ggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaacc 33304403  T
Q  133 atgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  33304404 atgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaat 33304468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 33644725 - 33644564
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatcc 132  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||  |||||  |||  |   ||||  | ||| ||| |||||| ||||||||||||||||    
T  33644725 atccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttg---ggtaggattgtaggtttgcctgaatgaattgtatcatcc 33644629  T
Q  133 atgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    ||||||||| |||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  33644628 atgaaaatgtcatgctcctgcaacgttccctctcacccaattttgaacagttgaaaatgaccaat 33644564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 28870355 - 28870198
Alignment:
Q  32 aatccaacttggtatttcacttcctggagtaacaatatgaatcccttc-aaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcat 130  Q
    |||||||||||||||||||||||||||||||||||||| || | | || |||||  |||  | ||||  | ||| |||||||| | ||||||||| ||||    
T  28870355 aatccaacttggtatttcacttcctggagtaacaatattaaacgcatccaaata--gac--aaggtaggattgtcggtatgcccgaatgaattgtttcat 28870260  T
Q  131 ccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatga 192  Q
    ||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||||    
T  28870259 ccatgaaaatgccatgctacaacaacgttccctctcacctaaatttggacagttgaaaatga 28870198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 33398958 - 33399038
Alignment:
Q  117 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  33398958 atgaattgtatcatccatgaaaatgtcatgctactgcaacgttccctctcacccaattttgaacagttgaaaatgaccaat 33399038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 9166649 - 9166736
Alignment:
Q  110 tgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    |||||| || ||||| |||||||||||||||| ||||||||||||| ||||| | ||||  |||| ||||||||||||||||||||||    
T  9166649 tgcctgaataaattgcatcatccatgaaaatgtcatgctactgcaatgttccttatcactcaattctggacagttgaaaatgaccaat 9166736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 33271690 - 33271776
Alignment:
Q  117 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcac------ctaattttggacagttgaaaatgaccaat 197  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| ||||      | |||||||||||||||||||||||||||    
T  33271690 atgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaatgaccaat 33271776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 33409861 - 33409956
Alignment:
Q  102 tgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    ||||||| |||||| ||||| |||  ||||||||||| ||  |||||||||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  33409861 tgttggtttgcctgaatgaaatgtgccatccatgaaattgtgatgctactgcaacgttccctctcaaccaattttggacagttgaaaatgaacaat 33409956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 33387977 - 33388130
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatcc 132  Q
    |||||||| |||||||||||||||| ||||||||| ||||||   |||||  |||   |||||||    ||| ||| |||||  || |||||| ||||||    
T  33387977 atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaatagg---cagggtaggtttgtcggtttgccttaataaattgtgtcatcc 33388073  T
Q  133 atgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaa 189  Q
    ||||||||| ||||||||||||||  ||||| ||||| | |||||||||||||||||    
T  33388074 atgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaa 33388130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 33057470 - 33057550
Alignment:
Q  117 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    ||||||||| |||||||| ||| || |||||| |||||| ||||||| ||||| |||||||||||||||||||||| ||||    
T  33057470 atgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaat 33057550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 33358800 - 33358846
Alignment:
Q  117 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccct 163  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||    
T  33358800 atgaattgtttcatccatgaaagtgtcatgctactgcaacgttccct 33358846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 33271618 - 33271657
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaa 72  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  33271618 atccaacttggtatttcacttcctggagttataatatgaa 33271657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 33409801 - 33409840
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaa 72  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  33409801 atccaacttggtatttcacttcctggagttacaatttgaa 33409840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 9166584 - 9166626
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaatcc 75  Q
    |||||||||||||||||| ||||||| |||||||| |||||||    
T  9166584 atccaacttggtatttcaattcctggcgtaacaatttgaatcc 9166626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 33398895 - 33398929
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaat 67  Q
    ||||||||||||||||||||||||||| |||||||    
T  33398895 atccaacttggtatttcacttcctggaataacaat 33398929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 33057401 - 33057442
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaatc 74  Q
    ||||||||||||||||||||||||||| |||| || ||||||    
T  33057401 atccaacttggtatttcacttcctggattaactatttgaatc 33057442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 467 - 628
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaatccctt-caaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatc 131  Q
    ||||| ||||||||||||||||||||||||||||| |||| | | | |||||| ||||     |||  | ||||||| |||||| ||||||||| |||||    
T  467 atccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggacc----gtaggattgttggtttgcctgaatgaattgtttcatc 562  T
Q  132 catgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    ||||||||||  |||||||| |||| |||||| ||||| |||||||||||||||||||||||||||    
T  563 catgaaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaat 628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 6213 - 6374
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaatccctt-caaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatc 131  Q
    ||||| ||||||||||||||||||||||||||||| |||| | | | |||||| ||||     |||  | ||||||| |||||| ||||||||| |||||    
T  6213 atccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggacc----gtaggattgttggtttgcctgaatgaattgtttcatc 6308  T
Q  132 catgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    ||||||||||  |||||||| |||| |||||| ||||| |||||||||||||||||||||||||||    
T  6309 catgaaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaat 6374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 31479191 - 31479032
Alignment:
Q  35 ccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccat 134  Q
    ||||||||| |||||||| |||||||||||||| |||| ||  ||| |   |||  || || | || ||| ||| |||||| ||||||||||||||||||    
T  31479191 ccaacttggcatttcactacctggagtaacaatttgaaccctatcaga---ggagtcatgggagaattgtcggtttgcctgaatgaattgtatcatccat 31479095  T
Q  135 gaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    ||||||| ||||||||| ||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  31479094 gaaaatgtcatgctactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaat 31479032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 31157123 - 31157210
Alignment:
Q  110 tgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    |||||| || |||||||||||||||||||||||||||||| |||||  ||| || ||||| ||||| |||||||||||||||||||||    
T  31157123 tgcctgaatcaattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaatttaggacagttgaaaatgaccaat 31157210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 31148192 - 31148268
Alignment:
Q  117 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgac 193  Q
    |||| |||||||||||||||||||  ||||||| | |||| |||||| ||||| ||||| |||||||||||||||||    
T  31148192 atgagttgtatcatccatgaaaatatcatgctattccaacattccctctcacccaatttaggacagttgaaaatgac 31148268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 31472661 - 31472571
Alignment:
Q  110 tgcctggatgaattgtatcatccatgaaaatgccatgctactgcaac---gttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    |||||| |||| |||||||||||||||||||| |||| || ||||||   ||||||| ||||| || || |||||||||||||||| ||||    
T  31472661 tgcctgaatgagttgtatcatccatgaaaatgtcatgttagtgcaacaatgttccctctcacccaaattaggacagttgaaaatgagcaat 31472571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 31499238 - 31499199
Alignment:
Q  35 ccaacttggtatttcacttcctggagtaacaatatgaatc 74  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  31499238 ccaacttgatatttcacttcctggagtaacaatatgaatc 31499199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 31472733 - 31472695
Alignment:
Q  35 ccaacttggtatttcacttcctggagtaacaatatgaat 73  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  31472733 ccaacttggtatttcacttcctggagtaacaatctgaat 31472695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 31504297 - 31504224
Alignment:
Q  117 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaat 190  Q
    ||||||||||||||||||||||||| ||| ||| || | | |||||| ||| | ||||| ||||||||||||||    
T  31504297 atgaattgtatcatccatgaaaatgtcattctaatgtagcattccctctcatccaatttaggacagttgaaaat 31504224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 31148122 - 31148161
Alignment:
Q  35 ccaacttggtatttcacttcctggagtaacaatatgaatc 74  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  31148122 ccaacttggtatttcacttcccggagtaacaatttgaatc 31148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 17440984 - 17440904
Alignment:
Q  117 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 197  Q
    |||||||| |||||||||||||||| |||||||||| ||| |||||| ||||| ||||||||||||||||| |||| ||||    
T  17440984 atgaattgcatcatccatgaaaatgtcatgctactgtaacattccctctcacccaattttggacagttgaagatgaacaat 17440904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 17441053 - 17441011
Alignment:
Q  33 atccaacttggtatttcacttcctggagtaacaatatgaatcc 75  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  17441053 atccaacttggtatttcgcttcctggactaacaatatgaatcc 17441011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 6785558 - 6785526
Alignment:
Q  35 ccaacttggtatttcacttcctggagtaacaat 67  Q
    ||||||||||||||||||||||||| |||||||    
T  6785558 ccaacttggtatttcacttcctggaataacaat 6785526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1117 times since January 2019
Visitors: 2244