View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0186_low_27 (Length: 204)
Name: NF0186_low_27
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0186_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 49520786 - 49520889
Alignment:
| Q |
1 |
caatctaatattgcctgaactgatgcactctcaggtataccttctggccacattggaatcaccacatacacgacaaacctctctccggcttcaattttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520786 |
caatctaatattgcctgaactgatgcactctcaggtataccttctggccacattggaatcaccacatacacgacaaacctctctccggcttcaattttgc |
49520885 |
T |
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| Q |
101 |
taat |
104 |
Q |
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|||| |
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| T |
49520886 |
taat |
49520889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 49509640 - 49509742
Alignment:
| Q |
1 |
caatctaatattgcctgaactgatgcactctcaggtataccttctggccacattggaatcaccacatacacgacaaacctctctccggcttcaattttgc |
100 |
Q |
| |
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|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| || | ||||| ||| |||||||| |||||||| |||| |
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| T |
49509640 |
caatctaatattgcttgaactgaagcactttcaggtataccttctggccacattggaatgacaatgtacacagaaaatctctctccagcttcaatcttgc |
49509739 |
T |
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| Q |
101 |
taa |
103 |
Q |
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||| |
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| T |
49509740 |
taa |
49509742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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