View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0186_low_3 (Length: 588)
Name: NF0186_low_3
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0186_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 3016454 - 3016991
Alignment:
| Q |
1 |
ttccagggagcctatgaaataaaaaatagaaagaattgcttatacctagatgctttttcactttgtttcttctgcctttgttggatagtcactttgttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016454 |
ttccagggagcctatgaaataaaaaatagaaagaattgtttatacctagatgctttttcactttgtttcttctgcctttgttggatagtcactttgttgt |
3016553 |
T |
|
| Q |
101 |
agaagtaggtctcaagagtcaaaacaatggttgaccaaaatattaatcacatgtgcttgatattgcannnnnnnncttggaactgcagcaagttggaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3016554 |
agaagtaggtctcaagagtcaaaacaatggttgaccaaaatattaatcacatgtgcttgatattgcattttttt-cttggaactgcagcaagttggaaag |
3016652 |
T |
|
| Q |
201 |
agcttatcaaaggttgaacaatcaccttctaagtccattcaaaaagcactctctccatcattgaaagcattgatttctgataaacttataaagcattcag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016653 |
agcttatcaaaggttgaacaatcaccttctaagtccattcaaaaagcactctctccatcattgaaagcattgatttctgataaacttataaagcattcag |
3016752 |
T |
|
| Q |
301 |
atgttggtgtcaaagttgcccttgcctcctgcttgagtgagttaacaagaatcactgcacccgatggtccttacaatgatcaccaaatgaaggtgtgctt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3016753 |
atgttggtgtcaaagttgcccttgcctcctgcttgagtgagttaacaagaatcactgcacctgatggtccttacaatgatcaccaaatgaaggtgtgctt |
3016852 |
T |
|
| Q |
401 |
gataannnnnnnngtacattaattgaattctattctattatcatgttcttaacaagttatgtctgttgagttatatggtgtcannnnnnnnncaggaggt |
500 |
Q |
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| T |
3016853 |
gataattttttttgtacattaattgaattctattctattatcatgttcttaacaagttatgtctgttgagttatatggtgtca-ttttctttcaggaggt |
3016951 |
T |
|
| Q |
501 |
cttgagattaattgtatcttcttttgaaaatctacatgat |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3016952 |
cttgagattaattgtatcttcttttgaaaatctacatgat |
3016991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 176 - 395
Target Start/End: Original strand, 3032368 - 3032587
Alignment:
| Q |
176 |
cttggaactgcagcaagttggaaagagcttatcaaaggttgaacaatcaccttctaagtccattcaaaaagcactctctccatcattgaaagcattgatt |
275 |
Q |
| |
|
|||||||||||||||| ||| || || |||||| |||||||||||||||| || | || || | ||| ||||| |||||||||||||||||||| ||| |
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|
| T |
3032368 |
cttggaactgcagcaaattgaaagctgcctatcaagggttgaacaatcacctcctgaatctatgctaaatgcactgtctccatcattgaaagcattaatt |
3032467 |
T |
|
| Q |
276 |
tctgataaacttataaagcattcagatgttggtgtcaaagttgcccttgcctcctgcttgagtgagttaacaagaatcactgcacccgatggtccttaca |
375 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| || |||||||||||||| |||||| ||||||||||||||||||| |||| |||||| |
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| T |
3032468 |
gctgataaacttataaagcattcagatgctgatgtcaaagtggctcttgcctcctgcttcagtgagataacaagaatcactgcacctgatgctccttatg |
3032567 |
T |
|
| Q |
376 |
atgatcaccaaatgaaggtg |
395 |
Q |
| |
|
||||| |||||||||||| |
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|
| T |
3032568 |
atgatggtcaaatgaaggtg |
3032587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 540
Target Start/End: Original strand, 3032620 - 3032727
Alignment:
| Q |
432 |
attctattatcatgttcttaacaagttatgtctgttgagttatatggtgtcannnnnnnnncaggaggtcttgagattaattgtatcttcttttgaaaat |
531 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||||||||| |||| ||||| ||||||||||| || |||||||||||||| ||||||||| |
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| T |
3032620 |
attctattatcatgctcttaacatattacatctgttgagttttatgttgtcattttcttt-caggaggtctttaggttaattgtatcttcatttgaaaat |
3032718 |
T |
|
| Q |
532 |
ctacatgat |
540 |
Q |
| |
|
||||||||| |
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|
| T |
3032719 |
ctacatgat |
3032727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 48970027 - 48969994
Alignment:
| Q |
507 |
attaattgtatcttcttttgaaaatctacatgat |
540 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
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|
| T |
48970027 |
attaattgtatcttcatttgaaaatctacatgat |
48969994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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