View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0186_low_4 (Length: 488)
Name: NF0186_low_4
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0186_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 460
Target Start/End: Complemental strand, 52566687 - 52566230
Alignment:
| Q |
9 |
tcataggtcaaatatttttcaaattgatatgggacaggaaagaacatgggagnnnnnnnnnnnnnnnnnnnnnngtagtcatgttgctttctcatctgaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
52566687 |
tcataggtcaaatatttttcaaattgatatgggacaggaaagaacatgggagaaaaaagaaaaaaaaa------gtagttatgttgctttctcatctgaa |
52566594 |
T |
|
| Q |
109 |
aataggtcttcttaaaacctgcattatacaaaatcttaatactccttttattaattataatgtatatacaaacatgtaggtaatcaagcttatgcaaata |
208 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52566593 |
aatag-tgttcttaaaacctgcattatacaaaatcttaatactccttttattaattataatgtatatacaaacatgtagttaatcaagcttatgcaaata |
52566495 |
T |
|
| Q |
209 |
tgaattaagaacatgctataattcaactgcaaaattagacaattagaatttcagcatataaagtcccttgaga-nnnnnnnnnncaaataataagaaata |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
52566494 |
tgaattaagaacatgctataattcaactgcaaaattagacaattagaatttcagcatataaagt-ccttgagatttttttttttcaaataataagaaata |
52566396 |
T |
|
| Q |
308 |
gattctttttctcgtctacttgctcaaatcatacatatatatataattaagttcac---------------aaatcacactcccacctattatnnnnnnn |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52566395 |
gattctttttctcgtctacttgctcaaatcatac--atatatataattaagttcacaaatcacaactcacaaaatcacactcccacctattataaaaaaa |
52566298 |
T |
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| Q |
393 |
ntcacactaccttcatctggttacaacgatgcaacttatttgtccttttttgtccttcaccttaattt |
460 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52566297 |
atcacactaccttcatctggttacaacgatgcaacttatttgtccttttttgtccttcaccttaattt |
52566230 |
T |
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