View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0186_low_8 (Length: 441)
Name: NF0186_low_8
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0186_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 2622398 - 2622827
Alignment:
| Q |
1 |
atatgtcaccatatttccgtatcctttttatgtggttttcggttttctcctatgagtactaatgatctaaaacatctgcatcaatgtaggagacacttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2622398 |
atatgtcaccatatttccgtatcctttttatgtggttttcggttttctcctatgagtactaatgatctaaaacatctgcgtcaatgtaggagacacttca |
2622497 |
T |
|
| Q |
101 |
taatcacaaagtatcgaccaacaaaattgaagctttagaaaatggaactaacgaggatgagaaaaataagacgatccaaaaagatgaaagcctcctaaaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622498 |
taatcacaaagtatcgaccaacaaaattgaagctttagaaaatggaactaacgaggatgagaaaaataagacgatccaaaaagatgaaagcctcctaaaa |
2622597 |
T |
|
| Q |
201 |
aattggcccttaatgtcatctattattgtttattgtgttttcgcgattcatgacgttgcttttgcagaggtattattattcctacttaaagatgtttctg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622598 |
aattggcccttaatgtcatctattattgtttattgtgttttcgcgattcatgacgttgcttttgcagaggtattattattcctacttaaagatgtttctg |
2622697 |
T |
|
| Q |
301 |
ttttctattctaccattcatcaacctgtgcatctattatcttattctacattttattttcgaagattttctcattatgggctgaaagtcctcgaaggtta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2622698 |
ttttctattctaccattcatcaacctgtgcatctattatcttattctacattttatttttgaagattttctcattatgggctgaaagtcctcgaaggtta |
2622797 |
T |
|
| Q |
401 |
ggcggtttgaactttggaactgatgatgtc |
430 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
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|
| T |
2622798 |
ggcggtttgaactttggaactaatgatgtc |
2622827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 2608230 - 2608291
Alignment:
| Q |
174 |
atccaaaaagatgaaagcctcctaaaaaattggcccttaatgtcatctattattgtttattg |
235 |
Q |
| |
|
|||||||||||||||| |||| | ||| ||||||||||||||||||||| |||| ||||| |
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|
| T |
2608230 |
atccaaaaagatgaaaacctcttcctaaactggcccttaatgtcatctattgttgtgtattg |
2608291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 39161876 - 39161948
Alignment:
| Q |
160 |
agaaaaataagacgatccaaaaagatgaaagcctcctaaaaaattggcccttaatgtcatctattattgttta |
232 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||| | ||||||||| || |||||||||||||||||||| |
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|
| T |
39161876 |
agaaagataagatgattgaaaaagatgaaagcctatttctaaattggcctttcatgtcatctattattgttta |
39161948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 26369202 - 26369141
Alignment:
| Q |
174 |
atccaaaaagatgaaagcctcctaaaaaattggcccttaatgtcatctattattgtttattg |
235 |
Q |
| |
|
|||||||||||||||| |||| | ||| ||||||||||||||||||||| |||| ||||| |
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|
| T |
26369202 |
atccaaaaagatgaaaacctcttcctaaactggcccttaatgtcatctattgttgtgtattg |
26369141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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