View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0186_low_9 (Length: 440)

Name: NF0186_low_9
Description: NF0186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0186_low_9
NF0186_low_9
[»] chr1 (33 HSPs)
chr1 (192-424)||(3872729-3872960)
chr1 (20-192)||(3873067-3873239)
chr1 (345-424)||(28218143-28218222)
chr1 (339-412)||(6133731-6133804)
chr1 (339-424)||(25543340-25543425)
chr1 (340-422)||(13114767-13114849)
chr1 (353-424)||(49730878-49730949)
chr1 (362-424)||(32211879-32211941)
chr1 (339-404)||(39039470-39039535)
chr1 (339-424)||(2225226-2225309)
chr1 (336-422)||(41917992-41918078)
chr1 (339-412)||(26980369-26980442)
chr1 (335-424)||(8741318-8741409)
chr1 (340-412)||(31074717-31074789)
chr1 (339-422)||(11135739-11135822)
chr1 (339-422)||(19101698-19101781)
chr1 (339-422)||(22540368-22540451)
chr1 (339-422)||(32848680-32848763)
chr1 (340-422)||(18157039-18157121)
chr1 (340-412)||(41095716-41095788)
chr1 (336-411)||(743416-743491)
chr1 (285-316)||(3884179-3884210)
chr1 (339-422)||(11430441-11430524)
chr1 (339-422)||(14094098-14094181)
chr1 (339-422)||(15523210-15523293)
chr1 (339-422)||(15531204-15531287)
chr1 (334-412)||(41958080-41958156)
chr1 (339-405)||(13388334-13388400)
chr1 (339-392)||(11430570-11430623)
chr1 (341-405)||(11135856-11135920)
chr1 (358-422)||(14341018-14341082)
chr1 (344-400)||(28274791-28274847)
chr1 (367-411)||(50773219-50773263)
[»] chr2 (31 HSPs)
chr2 (335-423)||(45554563-45554651)
chr2 (340-425)||(9470082-9470167)
chr2 (340-412)||(3804585-3804657)
chr2 (333-407)||(11539417-11539491)
chr2 (350-419)||(25666693-25666762)
chr2 (339-424)||(26767856-26767941)
chr2 (340-404)||(6980235-6980299)
chr2 (339-422)||(28898134-28898217)
chr2 (339-424)||(12989191-12989276)
chr2 (339-418)||(18511310-18511389)
chr2 (353-412)||(19639107-19639166)
chr2 (353-412)||(19837700-19837759)
chr2 (339-422)||(42182889-42182972)
chr2 (340-405)||(16719544-16719609)
chr2 (332-405)||(28898027-28898100)
chr2 (350-424)||(2476547-2476619)
chr2 (350-412)||(30718433-30718495)
chr2 (339-424)||(34142234-34142319)
chr2 (339-412)||(41546135-41546207)
chr2 (340-424)||(44274236-44274319)
chr2 (341-424)||(2122797-2122880)
chr2 (340-411)||(4602975-4603046)
chr2 (362-409)||(42579767-42579814)
chr2 (340-422)||(1107039-1107121)
chr2 (332-422)||(4964770-4964860)
chr2 (339-405)||(37719834-37719900)
chr2 (345-405)||(1110315-1110375)
chr2 (345-405)||(11729717-11729777)
chr2 (358-422)||(33747017-33747080)
chr2 (350-422)||(36471935-36472007)
chr2 (340-392)||(37228499-37228551)
[»] chr6 (20 HSPs)
chr6 (340-425)||(34905337-34905422)
chr6 (339-424)||(445818-445903)
chr6 (350-424)||(31116219-31116293)
chr6 (339-403)||(8441953-8442017)
chr6 (339-403)||(8450757-8450821)
chr6 (342-422)||(35128820-35128900)
chr6 (339-422)||(6531395-6531478)
chr6 (350-424)||(5106309-5106383)
chr6 (336-422)||(10133255-10133341)
chr6 (345-425)||(2675901-2675981)
chr6 (363-403)||(17226645-17226685)
chr6 (363-422)||(4595766-4595825)
chr6 (339-422)||(19090312-19090395)
chr6 (358-412)||(2931580-2931634)
chr6 (362-412)||(12327312-12327362)
chr6 (339-405)||(19090212-19090278)
chr6 (336-424)||(1392627-1392713)
chr6 (339-412)||(10060859-10060932)
chr6 (339-415)||(13001692-13001768)
chr6 (340-412)||(32122796-32122868)
[»] chr8 (20 HSPs)
chr8 (326-424)||(28413964-28414062)
chr8 (335-424)||(8903848-8903937)
chr8 (340-424)||(32072098-32072182)
chr8 (339-424)||(34861282-34861365)
chr8 (339-412)||(1977280-1977353)
chr8 (339-424)||(5979880-5979965)
chr8 (339-412)||(35151836-35151909)
chr8 (339-405)||(7599536-7599602)
chr8 (358-424)||(9952852-9952918)
chr8 (362-412)||(17499340-17499390)
chr8 (339-412)||(16983394-16983467)
chr8 (365-422)||(35689506-35689563)
chr8 (339-411)||(36629659-36629731)
chr8 (339-422)||(23685131-23685214)
chr8 (343-405)||(12212126-12212188)
chr8 (343-405)||(12456554-12456616)
chr8 (358-400)||(20545951-20545993)
chr8 (370-424)||(35797426-35797480)
chr8 (341-422)||(1205829-1205910)
chr8 (361-405)||(13856509-13856553)
[»] chr7 (36 HSPs)
chr7 (339-424)||(22189939-22190024)
chr7 (340-412)||(11824072-11824144)
chr7 (336-412)||(14795128-14795204)
chr7 (336-412)||(15242120-15242196)
chr7 (336-424)||(32212964-32213052)
chr7 (340-422)||(17749695-17749777)
chr7 (334-424)||(33008099-33008189)
chr7 (355-424)||(7775016-7775085)
chr7 (336-412)||(19422941-19423017)
chr7 (358-424)||(12271005-12271071)
chr7 (340-422)||(24539220-24539302)
chr7 (339-404)||(31502579-31502644)
chr7 (354-405)||(9111448-9111499)
chr7 (339-422)||(17354624-17354707)
chr7 (339-422)||(22786151-22786234)
chr7 (350-424)||(8073383-8073457)
chr7 (358-412)||(44511043-44511097)
chr7 (339-408)||(19840882-19840951)
chr7 (339-412)||(32205079-32205149)
chr7 (333-411)||(6442159-6442237)
chr7 (350-424)||(10934060-10934134)
chr7 (334-412)||(12263543-12263621)
chr7 (340-405)||(27320226-27320291)
chr7 (357-405)||(10619408-10619456)
chr7 (339-422)||(26703537-26703618)
chr7 (337-409)||(36845631-36845703)
chr7 (339-418)||(42274650-42274729)
chr7 (340-422)||(13919781-13919863)
chr7 (339-405)||(13919897-13919963)
chr7 (327-401)||(14759764-14759838)
chr7 (350-404)||(27949284-27949338)
chr7 (339-424)||(27888282-27888367)
chr7 (336-372)||(23434693-23434729)
chr7 (340-424)||(25092756-25092840)
chr7 (353-412)||(31874047-31874104)
chr7 (340-392)||(39254084-39254136)
[»] chr3 (34 HSPs)
chr3 (339-412)||(28529253-28529326)
chr3 (339-424)||(5452155-5452240)
chr3 (339-412)||(37776810-37776883)
chr3 (339-412)||(20493552-20493625)
chr3 (333-422)||(46450061-46450148)
chr3 (339-422)||(14236019-14236102)
chr3 (350-412)||(8825086-8825148)
chr3 (358-412)||(26310553-26310607)
chr3 (339-412)||(46160949-46161020)
chr3 (339-424)||(24734705-24734790)
chr3 (339-424)||(41451990-41452075)
chr3 (365-422)||(46237143-46237200)
chr3 (339-424)||(48351436-48351521)
chr3 (340-391)||(40715990-40716041)
chr3 (363-405)||(3313985-3314027)
chr3 (331-424)||(41387555-41387646)
chr3 (341-422)||(27243047-27243128)
chr3 (339-424)||(52124051-52124136)
chr3 (328-424)||(29755489-29755585)
chr3 (339-422)||(20791296-20791379)
chr3 (339-422)||(37600227-37600310)
chr3 (342-404)||(52951475-52951537)
chr3 (339-405)||(54140890-54140956)
chr3 (363-412)||(7419285-7419334)
chr3 (339-396)||(18722579-18722636)
chr3 (336-405)||(38928003-38928072)
chr3 (365-422)||(43657093-43657150)
chr3 (341-422)||(50661619-50661700)
chr3 (365-422)||(54140990-54141047)
chr3 (365-405)||(10769748-10769788)
chr3 (334-422)||(10769822-10769910)
chr3 (340-412)||(13809083-13809154)
chr3 (365-405)||(24748933-24748973)
chr3 (363-411)||(35094132-35094180)
[»] chr4 (28 HSPs)
chr4 (340-424)||(8108957-8109041)
chr4 (339-422)||(47237838-47237921)
chr4 (339-412)||(40991696-40991769)
chr4 (334-424)||(49077244-49077334)
chr4 (344-412)||(20454545-20454613)
chr4 (349-424)||(722167-722242)
chr4 (341-416)||(40812039-40812114)
chr4 (339-410)||(50571864-50571935)
chr4 (334-412)||(43771121-43771199)
chr4 (339-412)||(33653596-33653669)
chr4 (339-424)||(39471157-39471242)
chr4 (358-422)||(33996032-33996096)
chr4 (377-424)||(5044635-5044682)
chr4 (339-424)||(34129495-34129580)
chr4 (352-401)||(47009202-47009251)
chr4 (364-412)||(21776952-21777000)
chr4 (372-424)||(29699522-29699574)
chr4 (340-392)||(43958152-43958204)
chr4 (336-424)||(46287438-46287526)
chr4 (350-405)||(50164406-50164461)
chr4 (339-405)||(37315677-37315743)
chr4 (350-412)||(49242181-49242243)
chr4 (339-405)||(51206160-51206226)
chr4 (340-412)||(10169752-10169822)
chr4 (340-405)||(39016780-39016845)
chr4 (339-402)||(20225458-20225519)
chr4 (358-402)||(40615247-40615291)
chr4 (339-411)||(42862418-42862490)
[»] scaffold0838 (1 HSPs)
scaffold0838 (358-424)||(2241-2307)
[»] scaffold0832 (1 HSPs)
scaffold0832 (358-424)||(2272-2338)
[»] chr5 (17 HSPs)
chr5 (339-424)||(28490817-28490902)
chr5 (334-422)||(42224688-42224776)
chr5 (339-424)||(10142071-10142154)
chr5 (354-411)||(5465774-5465831)
chr5 (352-412)||(17537209-17537269)
chr5 (339-422)||(30325971-30326054)
chr5 (364-410)||(8912622-8912668)
chr5 (362-412)||(32050330-32050380)
chr5 (339-412)||(32309480-32309553)
chr5 (350-411)||(37455360-37455421)
chr5 (356-412)||(41330500-41330556)
chr5 (339-422)||(40971550-40971633)
chr5 (327-401)||(17568687-17568761)
chr5 (364-422)||(27592549-27592607)
chr5 (380-424)||(5413832-5413876)
chr5 (369-405)||(13456192-13456228)
chr5 (339-411)||(32050418-32050490)
[»] scaffold0016 (1 HSPs)
scaffold0016 (340-392)||(204707-204759)
[»] scaffold0005 (1 HSPs)
scaffold0005 (340-400)||(296837-296897)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 192 - 424
Target Start/End: Complemental strand, 3872960 - 3872729
Alignment:
Q  192 acattcaaaatatgtgtggagataaagaccggagcaagaaccaagtcttcattaaaaaccaaaagtgagaaagtagtagcacataaaatagtgtactgca 291  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3872960 acattcaaaatatgtgtggagataaagactggagcaagaaccaagtcttcattaaaaaccaaaactgagaaagtagtagcacataaaatagtgtactgca 3872861  T
Q  292 aaaagaaccaaatttggctaaaagaaatgagagaaatattttttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttat 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||    
T  3872860 aaaagaaccaaatttggctaaaagaaatgagagaaatattttttgaagaatgctagcaacactcacttttcaacactctctctagcactcactcttctat 3872761  T
Q  392 tagatgaaatcaatatatgtcacactactttgt 424  Q
    || || ||||||||||||||||||| |||||||    
T  3872760 taaat-aaatcaatatatgtcacaccactttgt 3872729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 3873239 - 3873067
Alignment:
Q  20 tcaaatcgcaattgaaccaaaatcattttaatgtattacttttcttgtttaacctttatagatctaatatcagacttcacctttcagtcattcttttgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  3873239 tcaaatcgcaattgaaccaaaatcattttaatgtattacttttcttgtttaacatttatagatctaatatcagacttcatctttcaatcattcttttgat 3873140  T
Q  120 atttaatatcgtacacacatatgacattacatttgtaaacactaaagttgaactaattagaaccacacctaca 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  3873139 atttaatatcgtacacacatatgacattacatttgtaaacactaaggttgaactaattagaaccactcctaca 3873067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 28218222 - 28218143
Alignment:
Q  345 tagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||| ||| |||||||    
T  28218222 tagcaacactcatttttcaaccctctctttagcattcactcttttattggatgaaatcaatgtatgtctcaccactttgt 28218143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 6133804 - 6133731
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| ||||||| ||||||||| ||||||||||| |||| |||||||| |||||||||||||||||||    
T  6133804 gaatgctagcaacactcacttttcaacaatctctctagcactcacccttttattggatgaaatcaatatatgtc 6133731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 25543340 - 25543425
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| ||||||| |||| ||||||||||||| || | ||||||||||| ||||||||||||||||||| ||| |||||||    
T  25543340 gaatgctagcaacactcacttttaaacactctctctaacacttactcttttatttgatgaaatcaatatatgtcccaccactttgt 25543425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 422
Target Start/End: Complemental strand, 13114849 - 13114767
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    ||||||||||||||||  ||||  |||||||||||| || ||||||||||||||||| ||||||||||||||| ||| |||||    
T  13114849 aatgctagcgacactctcttttggacactctctctaacactcactcttttattagataaaatcaatatatgtcccaccacttt 13114767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 49730878 - 49730949
Alignment:
Q  353 ctcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||| ||||||||||||| || || ||||||||||||||||| |||  ||||||||||||||||||||||    
T  49730878 ctcattcttcaacactctctataacactcactcttttattagattaaactaatatatgtcacactactttgt 49730949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 424
Target Start/End: Complemental strand, 32211941 - 32211879
Alignment:
Q  362 caacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||||| |||| |||||||||||||||||||||||||| ||||||  ||||||||||    
T  32211941 caacactctctccagcactcactcttttattagatgaaatcaatgtatgtccaactactttgt 32211879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 404
Target Start/End: Complemental strand, 39039535 - 39039470
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaa 404  Q
    |||||||||| ||||||| ||||||||||||| | ||||| ||||||||||||| |||||||||||    
T  39039535 gaatgctagcaacactcacttttcaacactctttttagcactcactcttttattggatgaaatcaa 39039470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 2225226 - 2225309
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||  ||||||| |||||||||||||||  ||||  |||||||||||| |||||||||||| |||||| ||| |||||||    
T  2225226 gaatgctagtaacactcaattttcaacactctct--agcacccactcttttattggatgaaatcaatgtatgtcccaccactttgt 2225309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 422
Target Start/End: Original strand, 41917992 - 41918078
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    ||||||||||||| ||||||  |||| | ||| |||||||||| ||||||||||||| | |||||||||| |||||| ||| |||||    
T  41917992 gaagaatgctagcaacactctcttttgagcaccctctctagcactcactcttttattgggtgaaatcaatgtatgtcccaccacttt 41918078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 26980442 - 26980369
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||| | ||||||| ||||||||||||||||||  | ||||||| ||||| |||||||||||| ||||||    
T  26980442 gaatgctaacaacactcacttttcaacactctctctaatactcactctattattggatgaaatcaatgtatgtc 26980369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 424
Target Start/End: Complemental strand, 8741409 - 8741318
Alignment:
Q  335 tgaagaatgctagcgacactcatttttcaacactctctct--agcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||||||| ||||||| ||||||| |||||||||  ||   ||||| ||||||| |||||||||||| |||||| ||||| |||||    
T  8741409 tgaagaatgctagcaacactcacttttcaaaactctctctttagtggtcacttttttattggatgaaatcaatgtatgtctcactaatttgt 8741318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 31074717 - 31074789
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||| | |||||||| ||| ||||||||| ||| |||| ||||||||||| ||||||||||||| |||||    
T  31074717 aatgctatcaacactcatgtttgaacactctccctaacatttactcttttatttgatgaaatcaatacatgtc 31074789  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 11135739 - 11135822
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||||||  |||| | |||||||||||||| ||||| ||||||| | |||||||||| |||||| ||| |||||    
T  11135739 gaatgctagcaacactctcttttgagcactctctctagcactcactattttattgggtgaaatcaatgtatgtcccaccacttt 11135822  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 19101781 - 19101698
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||| ||| ||||  ||||||||| ||||| ||||| ||||||| |||||||||||| |||||| ||| |||||    
T  19101781 gaatgctagcaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtcccaccacttt 19101698  T

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Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 22540368 - 22540451
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||| ||| ||||  ||||||||| ||||| ||||| ||||||| |||||||||||| |||||| ||| |||||    
T  22540368 gaatgctagcaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtcccaccacttt 22540451  T

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Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 32848763 - 32848680
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| | ||||||  |||| |||||||||||||||| ||||||||||||| | |||||||| | |||||| ||| |||||    
T  32848763 gaatgctaacaacactctcttttgaacactctctctagcactcactcttttattgggtgaaatcattgtatgtcccaccacttt 32848680  T

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Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 18157039 - 18157121
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| |||||||  |||||||||||||||||| ||  |||| ||||||| |||||||| ||| |||||| ||| |||||    
T  18157039 aatgctagggacactctcttttcaacactctctctaacacccacttttttattggatgaaattaatgtatgtcccaccacttt 18157121  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 41095788 - 41095716
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||| ||||||  |||| | |||||||||||||| |||||| |||||| | |||||||||| ||||||    
T  41095788 aatgctagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgtatgtc 41095716  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 411
Target Start/End: Original strand, 743416 - 743491
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgt 411  Q
    |||||||| |||| |||||||||||| |||||||||| ||  ||||| |  |||||| |||||||||||| |||||    
T  743416 gaagaatgttagccacactcattttttaacactctctttaaaattcaattgtttattggatgaaatcaatgtatgt 743491  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 316
Target Start/End: Complemental strand, 3884210 - 3884179
Alignment:
Q  285 tactgcaaaaagaaccaaatttggctaaaaga 316  Q
    ||||||||||||||||||||||||||||||||    
T  3884210 tactgcaaaaagaaccaaatttggctaaaaga 3884179  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 11430441 - 11430524
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| | ||||||  |||| | |||||| ||||||| ||||||||||||| | |||||||||| |||||| ||| |||||    
T  11430441 gaatgctaacaacactctcttttgagcactctttctagcactcactcttttattgggtgaaatcaatgtatgtcccaccacttt 11430524  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 14094181 - 14094098
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||||||| |   |||| ||||||||||| |||| ||||| ||||||| | |||||||||| |||||| ||| |||||    
T  14094181 gaatgctagcgacattatcttttgaacactctctccagcactcacttttttattgggtgaaatcaatgtatgtcccaccacttt 14094098  T

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Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 15523210 - 15523293
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| | ||| ||| ||||  ||||||||| ||||| ||||| ||||||| |||||||||||| |||||| ||| |||||    
T  15523210 gaatgctatcaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtcccaccacttt 15523293  T

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Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 15531204 - 15531287
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| | ||| ||| ||||  ||||||||| ||||| ||||| ||||||| |||||||||||| |||||| ||| |||||    
T  15531204 gaatgctatcaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtcccaccacttt 15531287  T

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Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 412
Target Start/End: Original strand, 41958080 - 41958156
Alignment:
Q  334 ttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||| |||||||||  ||||||| ||||||||||||||   |||| |||||| |||||| |||||||||||| ||||||    
T  41958080 ttgaggaatgctagtaacactcacttttcaacactctca--agcactcactcatttattggatgaaatcaatgtatgtc 41958156  T

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Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 13388334 - 13388400
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||||| ||||||  |||| || |||||||||| || ||||| ||||||| ||||||||||||    
T  13388334 gaatgctagcaacactctcttttgaatactctctctaacactcacttttttattggatgaaatcaat 13388400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 11430623 - 11430570
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttatt 392  Q
    |||||||||| ||||||  |||| | |||||||||||||| |||||||||||||    
T  11430623 gaatgctagcaacactctcttttgagcactctctctagcactcactcttttatt 11430570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 11135920 - 11135856
Alignment:
Q  341 atgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||| ||||||  |||| |  ||||||||||||| ||||||||||||| | ||||||||||    
T  11135920 atgctagcaacactctcttttgaggactctctctagcactcactcttttattgggtgaaatcaat 11135856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 422
Target Start/End: Complemental strand, 14341082 - 14341018
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||||||||||| || ||| | ||||||| |||||||  |||||||||| ||| |||||    
T  14341082 ttttcaacactctctctaacactcatttttttattggatgaaactaatatatgtcccaccacttt 14341018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 28274791 - 28274847
Alignment:
Q  344 ctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaa 400  Q
    |||| |||||||  |||||||||||||||||| || ||||||| ||||| |||||||    
T  28274791 ctagggacactctcttttcaacactctctctaacactcactctcttattggatgaaa 28274847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 50773263 - 50773219
Alignment:
Q  367 ctctctctagcattcactcttttattagatgaaatcaatatatgt 411  Q
    ||||||||| || ||||||||||||| ||| ||||||||||||||    
T  50773263 ctctctctaacactcactcttttattggataaaatcaatatatgt 50773219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 335 - 423
Target Start/End: Original strand, 45554563 - 45554651
Alignment:
Q  335 tgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttg 423  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||| ||||||    
T  45554563 tgaagaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtcccaccactttg 45554651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 9470082 - 9470167
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgtt 425  Q
    ||||||||| | |||||||||||||| ||||||||| || ||||||||||||| |||||||||||| |||||| ||| ||||||||    
T  9470082 aatgctagcaatactcatttttcaacgctctctctaacactcactcttttattggatgaaatcaatgtatgtcccaccactttgtt 9470167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 3804585 - 3804657
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||| ||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| ||||||    
T  3804585 aatgctagctacactcacttttcaacactctctttaacattcactcttttattggatgaaatcaatgtatgtc 3804657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 11539417 - 11539491
Alignment:
Q  333 tttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatat 407  Q
    ||||| |||||||| | |||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||    
T  11539417 tttgaggaatgctaacaacactcatttttgaacactctttctagcactcactcttttattggatgaaatcaatat 11539491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 350 - 419
Target Start/End: Complemental strand, 25666762 - 25666693
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactac 419  Q
    |||||||||||||||||||||||| | |||||||||||||||  |||||||||||| |||||| ||||||    
T  25666762 acactcatttttcaacactctctcaaacattcactcttttatcggatgaaatcaatgtatgtctcactac 25666693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 26767941 - 26767856
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| ||||||| ||||||||| ||||||||||| | ||||||||| | |||||||||||| |||||| ||| |||||||    
T  26767941 gaatgctagcaacactcacttttcaacattctctctagcacttactcttttactggatgaaatcaatgtatgtcccaccactttgt 26767856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 6980299 - 6980235
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaa 404  Q
    ||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  6980299 aatgctagcaacattcacttttcaacactctctctagcactcactcttttattggatgaaatcaa 6980235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 28898217 - 28898134
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| |||||| ||||| | |||||||||||||| ||||||||||||| | |||||||||| |||||| ||| |||||    
T  28898217 gaatgctagcaacactcttttttgagcactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccaccacttt 28898134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 12989191 - 12989276
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| ||||||| ||||||||||||||| |  || ||||||||| ||| |||||||||||| |||||| ||| |||||||    
T  12989191 gaatgctagcaacactcacttttcaacactctctttctcactcactctttcattggatgaaatcaatgtatgtcccaccactttgt 12989276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 18511389 - 18511310
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacacta 418  Q
    |||||||||| ||||||| |||| ||||||||| ||| || ||||||||||||| ||| |||||||| |||||| |||||    
T  18511389 gaatgctagcaacactcactttttaacactctcactatcactcactcttttattggataaaatcaatgtatgtcccacta 18511310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 19639107 - 19639166
Alignment:
Q  353 ctcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||| |||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  19639107 ctcactttttaacactctctccagcattcactattttattagatgaaatcaatgtatgtc 19639166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 19837700 - 19837759
Alignment:
Q  353 ctcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||| |||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  19837700 ctcactttttaacactctctccagcattcactattttattagatgaaatcaatgtatgtc 19837759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 42182889 - 42182972
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||||||  |||| | |||||||||||||| ||||||||||||| | |||||||||| |||||| ||| |||||    
T  42182889 gaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccaccacttt 42182972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 16719609 - 16719544
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    ||||||||| ||||||| ||||||||||| ||| |||||   ||||||||||||||||||||||||    
T  16719609 aatgctagcaacactcacttttcaacactgtctttagcacatactcttttattagatgaaatcaat 16719544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 28898027 - 28898100
Alignment:
Q  332 ttttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    ||||||||||||||||| ||||||  |||| |  ||||||| ||||| ||||||||||||| ||||||||||||    
T  28898027 ttttgaagaatgctagcaacactctcttttgagtactctctttagcactcactcttttattggatgaaatcaat 28898100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 2476547 - 2476619
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||| ||||||||| |||||  |||| | ||||||||||||||| |||||||| |||||| |||||||||||    
T  2476547 acactcacttttcaacattctct--agcacttactcttttattagataaaatcaatgtatgtcccactactttgt 2476619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 30718495 - 30718433
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||| |||| |||| ||||||||| | ||||||||||||| ||||||||| |||||||||    
T  30718495 acactcaattttaaacattctctctagtactcactcttttattggatgaaatcgatatatgtc 30718433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 34142319 - 34142234
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||| |||| ||||| | ||||||||| |||||| | |||||||| ||||||| ||||||||  || |||||| |||||||||||    
T  34142319 gaatgttagcaacacttacttttcaacaatctctcaaacattcacttttttattggatgaaattcatgtatgtctcactactttgt 34142234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 41546207 - 41546135
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||||  |||||  |||||||||||||||| | |||||||||| ||||| |||| ||||||||||||||    
T  41546207 gaatgctagcatcactctcttttcaacactctctcaaacattcactctcttattggatg-aatcaatatatgtc 41546135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 44274236 - 44274319
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||| ||||||| |||  | ||||||||||| |||||||||||| ||| ||| |||||||| |||||| ||| |||||||    
T  44274236 aatgctagcaacactcactttg-agcactctctctaacattcactctttcattggataaaatcaatgtatgtcccaccactttgt 44274319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 2122797 - 2122880
Alignment:
Q  341 atgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||| ||||||| ||||||| ||| |||||| || ||||||||| ||  |||||||||||| |||||  ||| |||||||    
T  2122797 atgctagcaacactcacttttcaatactttctctatcaatcactctttcataggatgaaatcaatgtatgtatcaccactttgt 2122880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 411
Target Start/End: Complemental strand, 4603046 - 4602975
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgt 411  Q
    |||| |||| ||||||| |||||||| ||| || | | | ||||||||||||| ||||||||||||||||||    
T  4603046 aatgttagcaacactcacttttcaacgctccctttggtactcactcttttattggatgaaatcaatatatgt 4602975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 409
Target Start/End: Complemental strand, 42579814 - 42579767
Alignment:
Q  362 caacactctctctagcattcactcttttattagatgaaatcaatatat 409  Q
    |||||||||||| | || ||||||||||||| ||||||||||||||||    
T  42579814 caacactctctcaaacactcactcttttattggatgaaatcaatatat 42579767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 1107039 - 1107121
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||| |||| ||||||  |||| | ||||||||||||||  |||||||||||| | |||||||||| |||||| ||| |||||    
T  1107039 aatgttagcaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgtatgtcccaccacttt 1107121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 422
Target Start/End: Complemental strand, 4964860 - 4964770
Alignment:
Q  332 ttttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||| |||||||||| ||| ||  |||| |  ||||||||||||| ||||| ||||||| | |||||||||| |||||| ||| |||||    
T  4964860 ttttgaggaatgctagcaacattctcttttgagtactctctctagcactcacttttttattgggtgaaatcaatgtatgtcccaccacttt 4964770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 37719834 - 37719900
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||||| ||| ||  |||| | |||||| ||||||| ||||||||||||| ||||||||||||    
T  37719834 gaatgctagcaacattctcttttgagcactctttctagcactcactcttttattggatgaaatcaat 37719900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 1110375 - 1110315
Alignment:
Q  345 tagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||| |||||| ||||| | |||||| |||| |||||||||||||||| | ||||||||||    
T  1110375 tagcaacactcttttttgagcactctttctaacattcactcttttattgggtgaaatcaat 1110315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 11729777 - 11729717
Alignment:
Q  345 tagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||| ||||||| ||||||||||||| |||| |||| | |||||||||  |||||||||||    
T  11729777 tagcaacactcacttttcaacactctttctaacatttattcttttattgaatgaaatcaat 11729717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 422
Target Start/End: Complemental strand, 33747080 - 33747017
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||| |||||||||| |||   ||||||||||||| ||||||||||||||||||| ||| |||||    
T  33747080 ttttgaacactctctttagacctcactcttttatt-gatgaaatcaatatatgtcccaccacttt 33747017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 36472007 - 36471935
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    ||||||| |||||||||||||||||  || ||| ||| ||||| |||||||||||  |||||| ||| |||||    
T  36472007 acactcacttttcaacactctctctgacactcaatctcttattggatgaaatcaaagtatgtctcaccacttt 36471935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 37228499 - 37228551
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttatt 392  Q
    ||||||||| ||||||  |||| | |||||||||||||| |||||||||||||    
T  37228499 aatgctagcaacactctcttttgagcactctctctagcactcactcttttatt 37228551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 34905337 - 34905422
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgtt 425  Q
    ||||||||| |||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||| ||| ||||||||    
T  34905337 aatgctagcaacactcatttttcaacactctctctaacactcactcttttattggatgaaatcaatgtatgtcccaccactttgtt 34905422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 445818 - 445903
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| | ||||||||||||||||| ||||||||| ||||| ||||||| |||||||||||| |||||||||| |||||||    
T  445818 gaatgctagcaatactcatttttcaacactatctctagcactcacttttttattggatgaaatcaatgtatgtcacaccactttgt 445903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 424
Target Start/End: Complemental strand, 31116293 - 31116219
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||| |||| ||||||||||||| ||||||||||| |||| |||||||||||| |||||| |||||||||||    
T  31116293 acactcacttttgaacactctctctaacattcactcttctattggatgaaatcaatgtatgtcccactactttgt 31116219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 8442017 - 8441953
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatca 403  Q
    ||||||||||  ||||||||||||||||||||||||| || |||||| |||||| ||||||||||    
T  8442017 gaatgctagcagcactcatttttcaacactctctctaacactcactcatttattggatgaaatca 8441953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 8450821 - 8450757
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatca 403  Q
    ||||||||||  ||||||||||||||||||||||||| || |||||| |||||| ||||||||||    
T  8450821 gaatgctagcagcactcatttttcaacactctctctaacactcactcatttattggatgaaatca 8450757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 35128900 - 35128820
Alignment:
Q  342 tgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    ||||||| ||||||  |||| |||||||||||||||| ||||||||||||| | | |||||||| |||||| ||| |||||    
T  35128900 tgctagcaacactctcttttgaacactctctctagcagtcactcttttattgggtaaaatcaatgtatgtcccaccacttt 35128820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 6531478 - 6531395
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||||||  |||| |  |||||||| |||| ||||||||||||| | |||||||||| |||||| |||||||||    
T  6531478 gaatgctagcaacactctcttttgaggactctctccagcactcactcttttattgggtgaaatcaatgtatgtcccactacttt 6531395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 5106309 - 5106383
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||| ||||||||||| |||||| || ||||| ||||||| ||| |||||||| |||||| ||| |||||||    
T  5106309 acactcacttttcaacactttctctaacactcacttttttattggataaaatcaatgtatgtcccaccactttgt 5106383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 422
Target Start/End: Complemental strand, 10133341 - 10133255
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| |||  ||||||| |||||||||||||||||| || |||||| |||||| |||||||| | | |||||| ||| |||||    
T  10133341 gaagaatggtagaaacactcacttttcaacactctctctaacactcactcatttattggatgaaattattgtatgtcccaccacttt 10133255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 2675901 - 2675981
Alignment:
Q  345 tagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgtt 425  Q
    |||| ||||||||||||||||| | | | || ||||||||||||||||  ||||| ||||| |||||| ||| ||||||||    
T  2675901 tagcaacactcatttttcaacattttttttaacattcactcttttattgaatgaattcaatgtatgtcccaccactttgtt 2675981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 17226685 - 17226645
Alignment:
Q  363 aacactctctctagcattcactcttttattagatgaaatca 403  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  17226685 aacactctctttagcattcactcttttattggatgaaatca 17226645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 4595766 - 4595825
Alignment:
Q  363 aacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||||||||| |||||||||||||   |||||||||| |||||| ||| |||||    
T  4595766 aacactctctctagcactcactcttttattgagtgaaatcaatgtatgtctcaccacttt 4595825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 19090395 - 19090312
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| | ||||||  |||| | ||||||||||||||  |||||||||||| | |||||||||| |||||| ||| |||||    
T  19090395 gaatgctaacaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgtatgtcccaccacttt 19090312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 412
Target Start/End: Original strand, 2931580 - 2931634
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||||||||||| ||||| ||  |||||| |||||||||||| ||||||    
T  2931580 ttttcaacactctctctatcattcgcttatttatttgatgaaatcaatgtatgtc 2931634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 12327362 - 12327312
Alignment:
Q  362 caacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||||||||||| ||||||||||||| |||  ||||||| ||||||    
T  12327362 caacactctctctagcagtcactcttttattggatagaatcaatgtatgtc 12327312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 19090212 - 19090278
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||||| ||||||  |||| | |||||||||||||| ||||||||||||| | |||| |||||    
T  19090212 gaatgctagcaacactctcttttgagcactctctctagcactcactcttttattggttgaattcaat 19090278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 424
Target Start/End: Original strand, 1392627 - 1392713
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||| |||  ||||||| |||| ||||||||||  |||| ||  | ||||||| |||||||||||| |||||| |||||||||||    
T  1392627 gaagaatgttagtaacactcactttttaacactctct--agcactctattttttattggatgaaatcaatgtatgtctcactactttgt 1392713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 10060859 - 10060932
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| ||||||  |||| |||||||| | || || ||||||||||||||  |||||||||| ||||||    
T  10060859 gaatgctagcaacactctcttttgaacactctttataacaatcactcttttattatgtgaaatcaatgtatgtc 10060932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 13001692 - 13001768
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcaca 415  Q
    |||||||||  ||||||| |||||| ||||||||||| |||||| | ||| ||| ||| |||| ||| |||||||||    
T  13001692 gaatgctagtaacactcacttttcagcactctctctaacattcattttttcattggataaaataaatgtatgtcaca 13001768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 32122796 - 32122868
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||| | ||||||  ||||||||||||| || | || |||||  |||||| |||||||||||||||||||    
T  32122796 aatgctaacaacactctcttttcaacactctttccaccactcacttatttattggatgaaatcaatatatgtc 32122868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 424
Target Start/End: Complemental strand, 28414062 - 28413964
Alignment:
Q  326 aatattttttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||| ||||||||||| | ||||||| ||||||||||||||||||||  ||||| ||||||| |||||||||||| |||||| ||| |||||||    
T  28414062 aatatttttcgaagaatgctaacaacactcacttttcaacactctctctagcgctcacttttttattcgatgaaatcaatgtatgtcccaccactttgt 28413964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 8903848 - 8903937
Alignment:
Q  335 tgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||| |||| ||||||||||||||||||||||||||| | |||||  |||||| |||||||||||| |||||| ||| |||||||    
T  8903848 tgaagaatgttagcaacactcatttttcaacactctctctagtactcacttgtttatttgatgaaatcaatgtatgtcccaccactttgt 8903937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 32072098 - 32072182
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||| |||||||| ||| |||||| ||| |||||||    
T  32072098 aatgctagcaacattcacttttcaacactctctctagcactcactcttttattggatgaaatgaatgtatgtcccaccactttgt 32072182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 34861365 - 34861282
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||||  | |||| |||||||||||||||  |||| ||||||||||||| |||||||||||| |||||| ||| |||||||    
T  34861365 gaatgctagcacctctcacttttcaacactctct--agcactcactcttttattggatgaaatcaatgtatgtcccaccactttgt 34861282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 1977353 - 1977280
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| | ||||| |||| |||||||||||||||| |||||||| | || |||||||||||| ||||||    
T  1977353 gaatgctagcaatactcactttttaacactctctctagcactcactcttctgttggatgaaatcaatgtatgtc 1977280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 5979880 - 5979965
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| ||||| | ||||||||||||||||||| |  ||||||| |||| ||||| |||||| |||||| ||| |||||||    
T  5979880 gaatgctagcaacacttacttttcaacactctctctagtagacactcttctattggatgagatcaatgtatgtcccaccactttgt 5979965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 35151909 - 35151836
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||| ||||| ||||||| |||| |||||||| | ||||||| ||||||||||| |||||||||||| ||||||    
T  35151909 gaatactagcaacactcactttttaacactctttttagcatttactcttttattggatgaaatcaatgtatgtc 35151836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 405
Target Start/End: Complemental strand, 7599602 - 7599536
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    ||||| |||| |||||| ||||| ||||||||||||||||   ||||||||||| ||||||||||||    
T  7599602 gaatgttagcaacactcttttttgaacactctctctagcacctactcttttattggatgaaatcaat 7599536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 9952918 - 9952852
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||||||||||||||| ||| | ||||||| ||||||||||||  ||||| ||| |||||||    
T  9952918 ttttcaacactctctctagcactcatttttttattggatgaaatcaatgcatgtcccaccactttgt 9952852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 17499390 - 17499340
Alignment:
Q  362 caacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||||||||||| ||  ||||||||| |||||||||||||||||||    
T  17499390 caacactctctctagcactctatcttttattggatgaaatcaatatatgtc 17499340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 16983394 - 16983467
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| ||||||| ||||||||||||| ||||||| |||||  |||||| ||| |||||| | ||||||    
T  16983394 gaatgctagcaacactcacttttcaacactctatctagcactcactgatttattggataaaatcattttatgtc 16983467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 35689506 - 35689563
Alignment:
Q  365 cactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||||||| ||||| ||||||| |||||||||||| |||||| ||| |||||    
T  35689506 cactctctctagcactcacttttttattggatgaaatcaatgtatgtcccaccacttt 35689563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 36629659 - 36629731
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgt 411  Q
    |||||||| | | |||||||||| |||||| ||| ||||| | |||||||||||||||||||| ||| |||||    
T  36629659 gaatgctaacaatactcatttttgaacactatctttagcacttactcttttattagatgaaataaatgtatgt 36629731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 23685131 - 23685214
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||| ||| ||||  |||||||||  |||| ||||| ||||||| |||||||||||| |||||| ||| |||||    
T  23685131 gaatgctagcaacattcacttttgcacactctcttaagcactcactattttattggatgaaatcaatgtatgtcccaccacttt 23685214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 405
Target Start/End: Original strand, 12212126 - 12212188
Alignment:
Q  343 gctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||| ||||||  ||||||||| |||||||| ||||||||||||| || | ||||||||||    
T  12212126 gctagcaacactctcttttcaacattctctctaacattcactcttttcttgggtgaaatcaat 12212188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 405
Target Start/End: Original strand, 12456554 - 12456616
Alignment:
Q  343 gctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||| ||||||  ||||||||| |||||||| ||||||||||||| || | ||||||||||    
T  12456554 gctagcaacactctcttttcaacattctctctaacattcactcttttcttgggtgaaatcaat 12456616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 20545951 - 20545993
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaa 400  Q
    |||||||||||||||||| |||||||||| |||||| ||||||    
T  20545951 ttttcaacactctctctaacattcactctcttattaaatgaaa 20545993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 424
Target Start/End: Original strand, 35797426 - 35797480
Alignment:
Q  370 tctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||||||||||||||||| ||| |||||||| |||||  ||| |||||||    
T  35797426 tctctagcattcactcttttattggataaaatcaatgtatgttccaccactttgt 35797480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 1205829 - 1205910
Alignment:
Q  341 atgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| ||||||  |||| | |||||||| ||||| ||||||||||||||| | |||| ||| |||||| ||| |||||    
T  1205829 atgctagcaacactctcttttgagcactctctttagcactcactcttttattaggtaaaattaatgtatgtctcaccacttt 1205910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 13856553 - 13856509
Alignment:
Q  361 tcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    ||||||||||||||| ||  |||||||||||| ||||||||||||    
T  13856553 tcaacactctctctaacacccactcttttattggatgaaatcaat 13856509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 22189939 - 22190024
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| | ||| |||||||    
T  22189939 gaatgctagaaacactcatttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatggcccaccactttgt 22190024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 11824072 - 11824144
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||| |||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||    
T  11824072 aatgttagcaacactcatttttcaacgctctctctagcactcactcttttattggatgaaatcaatgtatgtc 11824144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 14795128 - 14795204
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||||||| ||||||| |||||||||||||||||| || ||||| ||||||| |||||||||||| ||||||    
T  14795128 gaagaatgctagcaacactcacttttcaacactctctctatcagtcacttttttattggatgaaatcaatgtatgtc 14795204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 15242120 - 15242196
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||||||| ||||||| |||||||||||||||||| || ||||| ||||||| |||||||||||| ||||||    
T  15242120 gaagaatgctagcaacactcacttttcaacactctctctatcagtcacttttttattggatgaaatcaatgtatgtc 15242196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 336 - 424
Target Start/End: Complemental strand, 32213052 - 32212964
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||||||  ||||||| |||| |||||||||||||||| ||  ||||||||| |||||||||||| |||||| |||||||||||    
T  32213052 gaagaatgctagtaacactcactttttaacactctctctagcactctatcttttattggatgaaatcaatgtatgtctcactactttgt 32212964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 17749695 - 17749777
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||||||||| |||||  |||||||||||| || ||||||||||||| ||| ||||||||||||||| ||| |||||    
T  17749695 aatgctagcgacactcttttttggacactctctctaacactcactcttttattggataaaatcaatatatgtcccaccacttt 17749777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 33008099 - 33008189
Alignment:
Q  334 ttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||| |||||||||| ||||||| |||| |||||| ||||||||| ||||||||||||| |||||||||| | |||||| ||| |||||||    
T  33008099 ttgaggaatgctagcaacactcacttttgaacactatctctagcactcactcttttattggatgaaatcattgtatgtcccaccactttgt 33008189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 7775016 - 7775085
Alignment:
Q  355 catttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||| ||| |||||||    
T  7775016 catttttcaacactctctatagcactcactcttttattggatgaaatcaatgtatgtcccaccactttgt 7775085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 412
Target Start/End: Complemental strand, 19423017 - 19422941
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||| |||| ||||||| |||||||||||||||||| || ||||||||| ||| |||||||||||| ||||||    
T  19423017 gaagaatgttagcaacactcacttttcaacactctctctatcactcactctttcattggatgaaatcaatgtatgtc 19422941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 12271005 - 12271071
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||||| |||||| ||| |||||||    
T  12271005 ttttcaacactctctatagcatccactcttttatcagatgaaatcaatgtatgtcccaccactttgt 12271071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 422
Target Start/End: Complemental strand, 24539302 - 24539220
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    ||||||||||||||||  ||||  |||||||||||| || ||||||||||||| ||| ||||||||||||||| ||| |||||    
T  24539302 aatgctagcgacactctcttttggacactctctctaacactcactcttttattggataaaatcaatatatgtcccaccacttt 24539220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 404
Target Start/End: Complemental strand, 31502644 - 31502579
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaa 404  Q
    |||||||||| ||||||| ||||||||| |||||||| || ||||||||||||| |||||||||||    
T  31502644 gaatgctagcaacactcacttttcaacagtctctctaacactcactcttttattggatgaaatcaa 31502579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 9111499 - 9111448
Alignment:
Q  354 tcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||||||||    
T  9111499 tcattttttaacactctatttagcattcactcttttattagatgaaatcaat 9111448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 17354707 - 17354624
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| |||||| ||||| | ||||||||||| || ||| ||||||||| |||||||||||| |||||| ||| |||||    
T  17354707 gaatgctagcaacactcttttttgagcactctctctaacactcattcttttattggatgaaatcaatgtatgtcccaccacttt 17354624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 22786151 - 22786234
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||||||  |||| | |||||||||||||| ||||| ||||||||| |||||||||| |||||| ||| |||||    
T  22786151 gaatgctagcaacactctcttttgagcactctctctagcactcacttttttattaggtgaaatcaatgtatgtctcaccacttt 22786234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 424
Target Start/End: Complemental strand, 8073457 - 8073383
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||||||||||| |||  |||||| ||||||||||||  |||||||||||| |||||| ||| |||||||    
T  8073457 acactcatttttcaacattcttcctagcactcactcttttatcggatgaaatcaatgtatgtcccaccactttgt 8073383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 44511097 - 44511043
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||| ||||||    
T  44511097 ttttcaacactctctctagcactcacttttttattggatgaaatcaatgtatgtc 44511043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 19840882 - 19840951
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatata 408  Q
    |||||||||| ||||||  |||| | |||||||||||||| ||||||||||||| | |||||||||||||    
T  19840882 gaatgctagcaacactctattttgagcactctctctagcactcactcttttattgggtgaaatcaatata 19840951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 32205079 - 32205149
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| ||||||| |||| ||||||||||||   | ||||||||||||| |||||||||||| ||||||    
T  32205079 gaatgctagcaacactcacttttgaacactctctct---actcactcttttattggatgaaatcaatgtatgtc 32205149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 411
Target Start/End: Original strand, 6442159 - 6442237
Alignment:
Q  333 tttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgt 411  Q
    ||||| ||||| || | |||||||||||||||||||||||||| || ||| || ||||||  ||||||||||| |||||    
T  6442159 tttgaggaatgttaacaacactcatttttcaacactctctctatcactcagtcatttattgtatgaaatcaatgtatgt 6442237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 424
Target Start/End: Complemental strand, 10934134 - 10934060
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||| ||| |||||||||||||  ||||| ||||||||| ||| |||| |||||||||| ||| |||||||    
T  10934134 acactcatgttttaacactctctctattattcattcttttattggataaaattaatatatgtctcaccactttgt 10934060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 412
Target Start/End: Complemental strand, 12263621 - 12263543
Alignment:
Q  334 ttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||| ||| |||||| ||||| | |||||||||||||||||| ||| |||||||||||  |||| ||||||| ||||||    
T  12263621 ttgaggaacgctagcaacacttacttttcaacactctctctatcatccactcttttatcggatggaatcaatgtatgtc 12263543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 27320226 - 27320291
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    ||||||||| ||| |||||||||||||||||||| | || |||||||||||||  || ||||||||    
T  27320226 aatgctagcaacattcatttttcaacactctctccaacactcactcttttattgaataaaatcaat 27320291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 10619408 - 10619456
Alignment:
Q  357 tttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    ||||| |||| ||||||||||||| ||||||||||||| ||||||||||    
T  10619408 ttttttaacattctctctagcatttactcttttattaggtgaaatcaat 10619456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 26703618 - 26703537
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||||||  |||| | || ||||||||||| ||||||||||||| | |||||||||| |||||| ||| |||||    
T  26703618 gaatgctagcaacactc--ttttgagcattctctctagcactcactcttttattgggtgaaatcaatgtatgtctcaccacttt 26703537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 36845703 - 36845631
Alignment:
Q  337 aagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatat 409  Q
    ||||||| |||| ||| ||||||||||||||| ||| || |  |||||||||||||  |||||||||||||||    
T  36845703 aagaatgttagcaacattcatttttcaacactttctttatcgctcactcttttattgaatgaaatcaatatat 36845631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 42274729 - 42274650
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacacta 418  Q
    ||||| |||||| ||||||| || |||||||| | |  || | ||||||||||| |||||||||||| ||||||||||||    
T  42274729 gaatgttagcgatactcattattaaacactctatttgacagttactcttttatttgatgaaatcaatgtatgtcacacta 42274650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 13919781 - 13919863
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    ||||||||| ||||||  |||| | |||||||||||||| || ||| |||||| | |||||||||| |||||| ||| |||||    
T  13919781 aatgctagcaacactctcttttgagcactctctctagcactcgctcatttattgggtgaaatcaatgtatgtcccaccacttt 13919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 405
Target Start/End: Complemental strand, 13919963 - 13919897
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||||| ||||||  |||| | |||||||||||||| |||||| |||||| | ||||||||||    
T  13919963 gaatgctagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaatcaat 13919897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 401
Target Start/End: Complemental strand, 14759838 - 14759764
Alignment:
Q  327 atattttttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaat 401  Q
    |||||||| || |||||||||| ||||||  |||| | ||||||| ||||||  |||||||||||| ||||||||    
T  14759838 atatttttcgaggaatgctagcaacactctcttttgagcactctccctagcacccactcttttattggatgaaat 14759764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 27949284 - 27949338
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaa 404  Q
    ||||||| |||| ||||||||||||| || |||||||| |||| |||||||||||    
T  27949284 acactcactttttaacactctctctaacactcactcttgtattggatgaaatcaa 27949338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 27888282 - 27888367
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| ||||||| |||| | ||||||||||| || |||| || | ||| ||| |||||||| |||||| ||| |||||||    
T  27888282 gaatgctagcaacactcacttttgagcactctctctaacactcaccctctcattggataaaatcaatgtatgtcccaccactttgt 27888367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 23434693 - 23434729
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctct 372  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  23434693 gaagaatgctagggacactcctttttcaacactctct 23434729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 424
Target Start/End: Complemental strand, 25092840 - 25092756
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||| | ||||||| |||||||||||||||   |||  |||||||| ||| |||| ||||||| ||||||  ||||||||||    
T  25092840 aatgctaacaacactcacttttcaacactctcttccgcacccactctttcatttgatgcaatcaatgtatgtcctactactttgt 25092756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 31874047 - 31874104
Alignment:
Q  353 ctcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||| ||||||||||  |||| ||||| ||||||| |||||||||||| ||||||    
T  31874047 ctcattttttaacactctct--agcactcacttttttattggatgaaatcaatgtatgtc 31874104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 39254084 - 39254136
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttatt 392  Q
    ||||||||| ||| ||| ||||||||| ||||| ||||| |||||||||||||    
T  39254084 aatgctagcaacattcacttttcaacattctctatagcactcactcttttatt 39254136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 28529253 - 28529326
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||    
T  28529253 gaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtc 28529326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 5452240 - 5452155
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| ||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| ||| || ||| |||||||    
T  5452240 gaatgctagcaacactcacttttcaacactctctttaacattcactcttttattggatgaaatcaatgtatttcccaccactttgt 5452155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 37776883 - 37776810
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| ||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||    
T  37776883 gaatgctagcaacactcacttttcaacactttctccagcactcactcttttattagatgaaatcaatgtatgtc 37776810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 20493625 - 20493552
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| ||||||| |||||||||||||||||| || |||||| |||||| |||||||||||| ||||||    
T  20493625 gaatgctagcaacactcacttttcaacactctctctaacactcactcatttattggatgaaatcaatgtatgtc 20493552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 46450061 - 46450148
Alignment:
Q  333 tttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    ||||| |||||||||| ||||||| |||| ||||||||||  |||| |||||||||||||||||| ||||||| |||||| ||| |||||    
T  46450061 tttgaggaatgctagcaacactcacttttgaacactctct--agcactcactcttttattagatggaatcaatgtatgtcccaccacttt 46450148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 14236019 - 14236102
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| | ||||| ||||||  ||||||||| ||||| ||||| ||||||| ||||||||||||||||||| ||| |||||    
T  14236019 gaatgctaccaacacttatttttgcacactctctttagcactcactattttattggatgaaatcaatatatgtcccaccacttt 14236102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 8825148 - 8825086
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||| ||||||||  ||||||||| | |||| ||||||||||||||||||||||||||||    
T  8825148 acactcacttttcaaccatctctctagtactcacccttttattagatgaaatcaatatatgtc 8825086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 26310607 - 26310553
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||    
T  26310607 ttttcaacactctctctagcacttactcttttattggatgaaatcaatgtatgtc 26310553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 46160949 - 46161020
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| ||||||| |||| ||||||||||  |||| ||||||||||||| ||||||||||||| |||||    
T  46160949 gaatgctagcaacactcacttttgaacactctct--agcactcactcttttattggatgaaatcaatacatgtc 46161020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 24734705 - 24734790
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||| ||||| ||||||| ||||||||||  ||||||| | ||||||||||||| |||||||||||  |||||| ||| |||||||    
T  24734705 gaatactagcaacactcacttttcaacacaatctctagtactcactcttttattggatgaaatcaaagtatgtcccaccactttgt 24734790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 41452075 - 41451990
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||| ||||| ||||||| ||||||||||  ||||||| | ||||||||||||| |||||||||||  |||||| ||| |||||||    
T  41452075 gaatactagcaacactcacttttcaacacaatctctagtactcactcttttattggatgaaatcaaagtatgtcccaccactttgt 41451990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 46237200 - 46237143
Alignment:
Q  365 cactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||| ||| |||||    
T  46237200 cactctctctagcaatcactcttttattggatgaaatcaatgtatgtcccaccacttt 46237143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 48351436 - 48351521
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||| | ||||||| |||| |||||||||| ||  |  |||||||||||| ||| ||||||||||||||| |||||||||||    
T  48351436 gaatgctaacaacactcagtttttaacactctctttaagacacactcttttattggataaaatcaatatatgtctcactactttgt 48351521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 40716041 - 40715990
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttat 391  Q
    |||| |||| ||||||| ||||||||||||||||||||| ||||||||||||    
T  40716041 aatgttagcaacactcacttttcaacactctctctagcactcactcttttat 40715990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 405
Target Start/End: Original strand, 3313985 - 3314027
Alignment:
Q  363 aacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  3313985 aacactctctttagcattcactattttattagatgaaatcaat 3314027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 424
Target Start/End: Original strand, 41387555 - 41387646
Alignment:
Q  331 tttttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||| ||| ||||||||| ||||||||| |||||||  |||||||||| |||||| |||||| ||| ||||| || ||| |||||||| |||||    
T  41387555 ttttagaaaaatgctagcaacactcattattcaaca--ctctctagcactcactcatttattggattaaatcgatgtatatcacactattttgt 41387646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 27243047 - 27243128
Alignment:
Q  341 atgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| ||||||  |||| ||||||||||||| || ||||||||||||| ||| ||||||||  ||||| ||| |||||    
T  27243047 atgctagcaacactctcttttgaacactctctctaacactcactcttttattggataaaatcaatgcatgtcccaccacttt 27243128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 52124136 - 52124051
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| ||||||| |||| ||| |||||||||||| |||||  ||| || |||||||| ||| |||||| ||||| |||||    
T  52124136 gaatgctagcaacactcactttttaacgctctctctagcactcacttatttgttggatgaaattaatgtatgtcccactattttgt 52124051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 29755489 - 29755585
Alignment:
Q  328 tattttttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||| ||||| |||||||||| ||||||| ||||||||| ||||| || ||  |||||||||||   ||  |||||||||||||  |||||||||||    
T  29755489 tattatttgaggaatgctagcaacactcacttttcaacattctctttaacacccactcttttatcgaatagaatcaatatatgtttcactactttgt 29755585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 20791296 - 20791379
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||  ||| ||||  ||||||||| ||||| ||||| ||||||| |||||||||||| |||||| ||| |||||    
T  20791296 gaatgctagcaacgttcacttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtcccaccacttt 20791379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 37600310 - 37600227
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| | ||||||  |||| | ||||||||||||||  |||||||||||| | |||||||||| |||||| ||| |||||    
T  37600310 gaatgctaacaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgtatgtcccaccacttt 37600227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 52951537 - 52951475
Alignment:
Q  342 tgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaa 404  Q
    ||||||| ||||||  |||| |||||||||||||||| ||||||| | ||| |||||||||||    
T  52951537 tgctagcaacactctctttttaacactctctctagcactcactctctcattggatgaaatcaa 52951475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 54140890 - 54140956
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||||| ||||||  |||| | |||| ||||||||| |||||| |||||| ||||||||||||    
T  54140890 gaatgctagcaacactctcttttgagcactttctctagcactcactcatttattggatgaaatcaat 54140956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 7419334 - 7419285
Alignment:
Q  363 aacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||| | ||||| ||||||||||||||||| |||| ||||||||||    
T  7419334 aacactctatgtagcactcactcttttattagataaaataaatatatgtc 7419285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 396
Target Start/End: Complemental strand, 18722636 - 18722579
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagat 396  Q
    |||||||| | ||||||| ||||| ||||||||||||||| |||||  ||||||||||    
T  18722636 gaatgctaacaacactcacttttctacactctctctagcactcacttatttattagat 18722579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 38928003 - 38928072
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    ||||||||||||| ||||||  |||| | |||| |||||| || ||||||||||||| | ||||||||||    
T  38928003 gaagaatgctagcaacactctcttttgatcactttctctaacactcactcttttattgggtgaaatcaat 38928072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 43657150 - 43657093
Alignment:
Q  365 cactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||| ||||||||| ||||| ||||||| |||||||||||| |||||| ||| |||||    
T  43657150 cactttctctagcactcactattttatttgatgaaatcaatgtatgtcccaccacttt 43657093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 422
Target Start/End: Complemental strand, 50661700 - 50661619
Alignment:
Q  341 atgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||| ||| ||||||  |||| ||||||||||||| || | ||||||||||||||| ||||||||  ||||| ||| |||||    
T  50661700 atgcaagcaacactctcttttaaacactctctctaacacttactcttttattagataaaatcaatgcatgtcccaccacttt 50661619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 54141047 - 54140990
Alignment:
Q  365 cactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||||||| |||||| |||||| | |||||||||| |||||| ||| |||||    
T  54141047 cactctctctagcactcactcatttattgggtgaaatcaatgtatgtcccaccacttt 54140990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 10769748 - 10769788
Alignment:
Q  365 cactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||||||||| | ||||||||||| ||||||||||||    
T  10769748 cactctctctagcacttactcttttatttgatgaaatcaat 10769788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 422
Target Start/End: Complemental strand, 10769910 - 10769822
Alignment:
Q  334 ttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||| |||||||||| ||||||  |||| | ||||||||||| ||   ||||||||||| | |||||||||| |||||| ||| |||||    
T  10769910 ttgaggaatgctagcaacactctcttttgagcactctctctatcaccgactcttttatttggtgaaatcaatgtatgtcccaccacttt 10769822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 13809083 - 13809154
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||| ||||||  ||||  |||||||||||| | |||||||||||||| ||| |||||||| ||||||    
T  13809083 aatgctagcaacactctcttttacacactctctctaac-ttcactcttttattggataaaatcaatgtatgtc 13809154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 24748933 - 24748973
Alignment:
Q  365 cactctctctagcattcactcttttattagatgaaatcaat 405  Q
    ||||||||||| || ||||||||||||| ||||||||||||    
T  24748933 cactctctctaacactcactcttttattggatgaaatcaat 24748973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 35094180 - 35094132
Alignment:
Q  363 aacactctctctagcattcactcttttattagatgaaatcaatatatgt 411  Q
    ||||||||||||||||||  ||||||||||  ||||||| |||||||||    
T  35094180 aacactctctctagcatttgctcttttattgaatgaaattaatatatgt 35094132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 8108957 - 8109041
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| | |||||||||| |||||| ||||| |||||    
T  8108957 aatgctagcaacactcacttttcaacactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccactaatttgt 8109041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 47237921 - 47237838
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| | ||||||  |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||    
T  47237921 gaatgctatcaacactctcttttgaacactctctctagcattcactcttttattggatgaaatcaatatatgtcccaccacttt 47237838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 40991769 - 40991696
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| ||||||| |||||||||||||||||| || ||||||||| ||| |||||||||||||||||||    
T  40991769 gaatgctagcaacactcacttttcaacactctctctatcactcactctttcattggatgaaatcaatatatgtc 40991696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 49077244 - 49077334
Alignment:
Q  334 ttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||| |||||||||| ||||||| ||||||||| ||||| ||||| ||| ||||||||||||| |||| |||||||||| ||| |||||||    
T  49077244 ttgaggaatgctagcaacactcagttttcaacattctctttagcactcattcttttattagataaaattaatatatgtcccaccactttgt 49077334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 412
Target Start/End: Original strand, 20454545 - 20454613
Alignment:
Q  344 ctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||| ||||| | ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  20454545 ctagcaacacttacttttcaacactctctctagcactcactcttttattagataaaatcaatgtatgtc 20454613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 722167 - 722242
Alignment:
Q  349 gacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||| |||||||||||  |||||| ||| |||||||    
T  722167 gacactcatctttcaacactctctctagcactcacttttttattggatgaaatcaaagtatgtcccaccactttgt 722242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 416
Target Start/End: Original strand, 40812039 - 40812114
Alignment:
Q  341 atgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacac 416  Q
    |||||||| |||||| ||||| |||||||||||||||| ||||||||||||| | |||||||||||| | ||||||    
T  40812039 atgctagcaacactcttttttgaacactctctctagcactcactcttttattgggtgaaatcaatatttatcacac 40812114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 410
Target Start/End: Original strand, 50571864 - 50571935
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatg 410  Q
    ||||| |||| ||| ||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  50571864 gaatgttagcaacagtcacttttcaacactctctctagcacttactcttttattagatgaaatcaatgtatg 50571935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 412
Target Start/End: Original strand, 43771121 - 43771199
Alignment:
Q  334 ttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| |||| ||||||| |||| |||||||||||||  | ||||||||||||| |||||||||||| ||||||    
T  43771121 ttgaagaatggtagcaacactcacttttgaacactctctctatgactcactcttttattggatgaaatcaatgtatgtc 43771199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 33653669 - 33653596
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||| ||||||| ||||||||||||||||||  | |||||| |||||| |||||||||||| ||||||    
T  33653669 gaatgctagcaacactcagttttcaacactctctctattaatcactcatttatttgatgaaatcaatgtatgtc 33653596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 39471157 - 39471242
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| ||||||| |||| || ||||||| || ||   |||||||||||||||||||||||| |||||| ||| |||||||    
T  39471157 gaatgctagcaacactcacttttaaatactctctttaacaccaactcttttattagatgaaatcaatgtatgtcccaccactttgt 39471242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 422
Target Start/End: Complemental strand, 33996096 - 33996032
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||||||| ||||||||||||||||| || |||||||| |||||| ||| |||||    
T  33996096 ttttcaacacactctctaacattcactcttttattaaatcaaatcaatgtatgtctcaccacttt 33996032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 5044682 - 5044635
Alignment:
Q  377 cattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  5044682 cattcacttttttattggatgaaatcaatatatgtcacactattttgt 5044635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 34129580 - 34129495
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||| |||| ||| ||| ||||||| ||||||||||||| |||||||| |||| ||||| |||||| ||| || ||| |||||||    
T  34129580 gaatggtagcaacattcacttttcaaaactctctctagcactcactcttctattggatgagatcaatgtatatcccaccactttgt 34129495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 47009202 - 47009251
Alignment:
Q  352 actcatttttcaacactctctctagcattcactcttttattagatgaaat 401  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||| ||||    
T  47009202 actcatttttcaacactctttctagcactcactcttttattggataaaat 47009251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 21777000 - 21776952
Alignment:
Q  364 acactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||||||||| |||||||||||||||| ||| |||||||| ||||||    
T  21777000 acactctctctaacattcactcttttattggataaaatcaatgtatgtc 21776952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 29699522 - 29699574
Alignment:
Q  372 tctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||| ||||||||||||| ||||||||||||| ||||| ||| |||||||    
T  29699522 tctagcactcactcttttattggatgaaatcaatacatgtcccaccactttgt 29699574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 43958152 - 43958204
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttatt 392  Q
    |||| |||| ||||||| |||| |||| |||||||||||||||||||||||||    
T  43958152 aatgttagcaacactcagtttttaacattctctctagcattcactcttttatt 43958204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 424
Target Start/End: Original strand, 46287438 - 46287526
Alignment:
Q  336 gaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||||||  ||||||| ||||||| | | | ||||||| | ||| ||||||| |||||||| ||||||||||  ||||||||||    
T  46287438 gaagaatgctagtaacactcacttttcaatattttttctagcacttactattttattggatgaaattaatatatgtcttactactttgt 46287526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 50164406 - 50164461
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    ||||||| |||| |||||||||||||||| |||||| |||||| ||| ||||||||    
T  50164406 acactcactttttaacactctctctagcactcactcatttattggataaaatcaat 50164461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 405
Target Start/End: Complemental strand, 37315743 - 37315677
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||||| |||||| ||||| | |||||||  ||||| ||||||||||||| | ||||||||||    
T  37315743 gaatgctagcaacactcttttttgagcactctcattagcactcactcttttattgggtgaaatcaat 37315677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 49242181 - 49242243
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||| |||| |||||||| |||| || ||||| ||| ||| |||||||||||||||||||    
T  49242181 acactcacttttgaacactctatctaacagtcactttttaattggatgaaatcaatatatgtc 49242243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 405
Target Start/End: Complemental strand, 51206226 - 51206160
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||| ||||| ||||||  |||| | |||||||||||||| ||||||||||||| | ||||||||||    
T  51206226 gaatactagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaatcaat 51206160  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 10169822 - 10169752
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||| | ||| ||| |||||||||||||||  |  ||||||||| ||||| |||||||||||||||||||    
T  10169822 aatgctaacaacattcacttttcaacactctct--aatattcactctattattggatgaaatcaatatatgtc 10169752  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 39016845 - 39016780
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||| |||| ||||||  |||| |||||||||||||||| | ||||||||||||| | ||||||||    
T  39016845 aatgttagcaacactctcttttgaacactctctctagcacttactcttttattaggtaaaatcaat 39016780  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 402
Target Start/End: Complemental strand, 20225519 - 20225458
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatc 402  Q
    |||||||||| ||||||| |||| ||||||||||  |||| ||||||||||||| |||| ||||    
T  20225519 gaatgctagcaacactcacttttgaacactctct--agcactcactcttttattggatggaatc 20225458  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 40615247 - 40615291
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatc 402  Q
    |||||||||||||||||| |||||||| | ||||| |||||||||    
T  40615247 ttttcaacactctctctaacattcactatcttattggatgaaatc 40615291  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 42862418 - 42862490
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgt 411  Q
    |||||||||| ||||||  |||| | |||| | ||||||| ||||||||||||| | |||||||||| |||||    
T  42862418 gaatgctagcaacactctcttttgagcactatatctagcactcactcttttattgggtgaaatcaatttatgt 42862490  T

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Target: scaffold0838 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 2241 - 2307
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||| | ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  2241 ttttcaatattctctctagcactcactcttttataagatgaaatcaatgtatgtcacactactttgt 2307  T

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Target: scaffold0832 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 2272 - 2338
Alignment:
Q  358 ttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||| | ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  2272 ttttcaatattctctctagcactcactcttttataagatgaaatcaatgtatgtcacactactttgt 2338  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 28490902 - 28490817
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| ||| ||| ||||||| ||||||||||||||||||| ||||||| |||||||||||  |||||| ||| |||||||    
T  28490902 gaatgctagcaacagtcacttttcaaaactctctctagcattcacttttttattggatgaaatcaaagtatgtcccaccactttgt 28490817  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 422
Target Start/End: Complemental strand, 42224776 - 42224688
Alignment:
Q  334 ttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||| |||||||||| ||||||  |||| | |||||||||||||| ||||||||||||||| |||||||||| |||||| ||| |||||    
T  42224776 ttgaggaatgctagcaacactctcttttgagcactctctctagcactcactcttttattaggtgaaatcaatgtatgtcccaccacttt 42224688  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 10142154 - 10142071
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    |||||||||| ||||||||||||||||||||| |  |||| ||||||||||||| ||| |||||||| |||||| ||| |||||||    
T  10142154 gaatgctagcaacactcatttttcaacactctat--agcactcactcttttattggataaaatcaatgtatgtcccaccactttgt 10142071  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 5465831 - 5465774
Alignment:
Q  354 tcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgt 411  Q
    |||||||| |||||||||| ||||||| | |||||||||||||||||| |||||||||    
T  5465831 tcatttttgaacactctctttagcatttattcttttattagatgaaattaatatatgt 5465774  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 412
Target Start/End: Complemental strand, 17537269 - 17537209
Alignment:
Q  352 actcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||| |||||||||||||||||| || ||||||||||||| ||| |||||||| ||||||    
T  17537269 actcacttttcaacactctctctatcactcactcttttatttgatcaaatcaatgtatgtc 17537209  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 30326054 - 30325971
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||||| ||| ||| ||||  ||||||||| ||||| ||||| ||||||| |||||||||||| |||||| ||| |||||    
T  30326054 gaatgctagcaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtctcaccacttt 30325971  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 8912668 - 8912622
Alignment:
Q  364 acactctctctagcattcactcttttattagatgaaatcaatatatg 410  Q
    |||||||||||| || ||||||||||||||| |||||||||||||||    
T  8912668 acactctctctatcactcactcttttattaggtgaaatcaatatatg 8912622  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 32050330 - 32050380
Alignment:
Q  362 caacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||||||||||||||| ||||||||| | |||||| ||||||||||    
T  32050330 caacactctctctagcattcattcttttattgggtgaaattaatatatgtc 32050380  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 32309480 - 32309553
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    ||||||||| |||||||  ||||||||| ||||||||||| ||||||| ||||| ||| |||| ||| ||||||    
T  32309480 gaatgctagagacactctcttttcaacattctctctagcactcactctcttattggataaaattaatgtatgtc 32309553  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 37455360 - 37455421
Alignment:
Q  350 acactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgt 411  Q
    |||||||||||| ||||||||||||||||  ||||| |||||| ||| |||||||| |||||    
T  37455360 acactcattttttaacactctctctagcacacactcatttattcgataaaatcaatgtatgt 37455421  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 412
Target Start/End: Complemental strand, 41330556 - 41330500
Alignment:
Q  356 atttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtc 412  Q
    |||||| |||||||| | |||||| ||||||||||||||||||||| ||| ||||||    
T  41330556 atttttgaacactctttgtagcatccactcttttattagatgaaattaatgtatgtc 41330500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 40971633 - 40971550
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    |||||||| | ||||||  |||| | |||||||||||||| |||||||||||||   |||||||||| |||||| ||| |||||    
T  40971633 gaatgctaacaacactctcttttgagcactctctctagcactcactcttttattgagtgaaatcaatgtatgtcccaccacttt 40971550  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 401
Target Start/End: Original strand, 17568687 - 17568761
Alignment:
Q  327 atattttttgaagaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaat 401  Q
    |||||||| || |||||||||| ||||||  |||| | ||||||| ||||||  |||||||||||| ||||||||    
T  17568687 atatttttcgaggaatgctagcaacactctcttttgagcactctccctagcacccactcttttattggatgaaat 17568761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 27592607 - 27592549
Alignment:
Q  364 acactctctctagcattcactcttttattagatgaaatcaatatatgtcacactacttt 422  Q
    ||||||||| ||||| ||||| ||||||| |||||||||||| |||||| ||| |||||    
T  27592607 acactctctttagcactcactattttattggatgaaatcaatgtatgtctcaccacttt 27592549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 5413876 - 5413832
Alignment:
Q  380 tcactcttttattagatgaaatcaatatatgtcacactactttgt 424  Q
    ||||||||||||| |||||||||||| |||||| ||| |||||||    
T  5413876 tcactcttttattggatgaaatcaatgtatgtcccaccactttgt 5413832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 13456192 - 13456228
Alignment:
Q  369 ctctctagcattcactcttttattagatgaaatcaat 405  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  13456192 ctctctagcactcactcttttattaggtgaaatcaat 13456228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 32050490 - 32050418
Alignment:
Q  339 gaatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaatcaatatatgt 411  Q
    |||||||||| ||||||  |||| | || ||||||||||| ||||| ||||||| | |||||||||| |||||    
T  32050490 gaatgctagcaacactctcttttgagcattctctctagcactcacttttttattgggtgaaatcaatgtatgt 32050418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 204707 - 204759
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttatt 392  Q
    ||||||||| |||||| ||||| |||| ||||||||| | |||||||||||||    
T  204707 aatgctagcaacactcttttttgaacattctctctagtactcactcttttatt 204759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 296837 - 296897
Alignment:
Q  340 aatgctagcgacactcatttttcaacactctctctagcattcactcttttattagatgaaa 400  Q
    |||||||| ||||||   |||||||||||||||||| || ||||||| ||||| |||||||    
T  296837 aatgctagggacactttcttttcaacactctctctaacactcactctcttattggatgaaa 296897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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