View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0187_high_3 (Length: 314)
Name: NF0187_high_3
Description: NF0187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0187_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 9121893 - 9121599
Alignment:
| Q |
10 |
atcttatttttgttctatctctattcttactatatcac-gatctatcatatcactcaatatttttctctcttaagatatagtaccttaggtgtgtgaatc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
9121893 |
atcttatttttgttctatctctattcttactatatcaccgatatatcatatcactcaatatttttctctcttaagatatagtacggtgggtgtatgaatc |
9121794 |
T |
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| Q |
109 |
tctaaatgataattttcaaatccaaaagtaaaaaacttcaaacatgaaaattttatttatccacccaaaaatcatatat--------------tagcaat |
194 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9121793 |
tctaa-tgataattttcaaatccaaaagtaaaaaacttcaaacacgaaaattttatttatccacccaaaaatcatatatctcaactaattcaatagcaat |
9121695 |
T |
|
| Q |
195 |
atcttttcttgacctcaaagtgtacctttcaacttttacataatgaataaatttgataaataggaatattccttc-ttttttaagggaaaatagga |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
9121694 |
ttcttttcttgacctcaaagtgtacctttcaacttttacataatgaataaatttgataaataggaatataccttctttttttaagggaaaatagga |
9121599 |
T |
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