View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0187_high_7 (Length: 240)
Name: NF0187_high_7
Description: NF0187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0187_high_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 15284251 - 15284471
Alignment:
| Q |
20 |
gacaccgcgaatcgtgacaacttatgttcttaaaagaagtggaatctttaggatcataatatggtccattttgatcaaaacaagcataacaaggaacaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15284251 |
gacaccgcgaatcgtgacaacttatgttcttaaaagaagtggaatctttaggatcataatatggtccattttgatcaaaacaagcataacaaggaacaca |
15284350 |
T |
|
| Q |
120 |
ttgaatccagttaagatcactaccggtgtcaagtatcagagaaaaatgttttggtggcgtaccgatgaatacatcgatgaaatactcaccggaaccaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15284351 |
ttgaatccagttaagatcactaccggtgtcaagtatcagagaaaaatgttttggtggcgtaccgatgaatacatcgatgaaatactcaccggaaccaaaa |
15284450 |
T |
|
| Q |
220 |
cttactcctgattccacggtg |
240 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
15284451 |
cttactcctgattccaaggtg |
15284471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 39712846 - 39712662
Alignment:
| Q |
51 |
aaaagaagtggaatctttaggatcataatatggtccattttgatcaaaacaagcataacaaggaacacattgaatccagttaagatcactaccggtgtca |
150 |
Q |
| |
|
||||||| | || |||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||| |||||||||||||| || ||| |
|
|
| T |
39712846 |
aaaagaactagattctttaggatcataatatggaccactttgttcaaaacaagcaatgcaaggaacacattgaatccaattaagatcactaccagtatca |
39712747 |
T |
|
| Q |
151 |
agtatcagagaaaaatgttttggtggcgtaccgatgaatacatcgatgaaatactcaccggaaccaaaacttactcctgattcca |
235 |
Q |
| |
|
||||||| |||| |||| || ||||| ||||| || || ||||| |||||||||||||| || |||| ||| || |||||||||| |
|
|
| T |
39712746 |
agtatcaaagaataatgcttaggtggtgtacctataaacacatccatgaaatactcaccagagccaagactcacccctgattcca |
39712662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 854 times since January 2019
Visitors: 2241