View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0187_low_12 (Length: 252)
Name: NF0187_low_12
Description: NF0187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0187_low_12 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 29 - 237
Target Start/End: Complemental strand, 5434 - 5226
Alignment:
| Q |
29 |
agcttattaccaccttcacatttttattattttccttcaatcgtttcacatcttctggaccgaagaattcaacgttccaagttgtgttgaaaactcctgt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5434 |
agcttattaccaccttcacatttttattattttccttcaaccgtttcacatcttctggaccgaagaattcaacgttccaagttgttttgaaaactcctgt |
5335 |
T |
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| Q |
129 |
gcctcnnnnnnnatcatcatactcctcgcttgcaaagcccaaaatgaagtggaattctgagatattggagtttatgatattaattggaaaatcacgtaaa |
228 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5334 |
gcctctttttttatcatcatactcctcgcttgcaaagcccaaaatgaagtggaattctgagatattggagttgatgatattaattggaaaatcacgtaaa |
5235 |
T |
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| Q |
229 |
ctttttgag |
237 |
Q |
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||||||||| |
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| T |
5234 |
ctttttgag |
5226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 15761 - 15595
Alignment:
| Q |
30 |
gcttattaccaccttcacatttttattattttccttcaatcgtttcacatcttctggaccgaagaattcaacgttccaagttgtgttgaaaactcctgtg |
129 |
Q |
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|||||||||||||||||||||| ||||||| ||||||| | |||| ||||||||||||| | | ||||||||| ||||||||||||||| |
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| T |
15761 |
gcttattaccaccttcacatttggattatttcccttcaaatttctcactgcttctggaccgaatgctctagtattccaagtttccttgaaaactcctgtg |
15662 |
T |
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| Q |
130 |
cctcnnnnnnnatcatcatactcctcgcttgcaaagcccaaaatgaagtggaattctgagatattgg |
196 |
Q |
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| T |
15661 |
cctttattttgagcgtcatactcctcagtggcaaatcccaaaatgaagtggaattctgagatattgg |
15595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 25929 - 25763
Alignment:
| Q |
30 |
gcttattaccaccttcacatttttattattttccttcaatcgtttcacatcttctggaccgaagaattcaacgttccaagttgtgttgaaaactcctgtg |
129 |
Q |
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|||||||||||||||||||||| ||||||| ||||||| | |||| ||||||||||||| | | ||||||||| ||||||||||||||| |
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| T |
25929 |
gcttattaccaccttcacatttggattatttcccttcaaatttctcactgcttctggaccgaatgctctagtattccaagtttccttgaaaactcctgtg |
25830 |
T |
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| Q |
130 |
cctcnnnnnnnatcatcatactcctcgcttgcaaagcccaaaatgaagtggaattctgagatattgg |
196 |
Q |
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||| | | ||||||||||| | ||||| ||||||||||||||||||||||||||||||| |
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| T |
25829 |
cctttattttgagcgtcatactcctcagtggcaaatcccaaaatgaagtggaattctgagatattgg |
25763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 36095 - 35929
Alignment:
| Q |
30 |
gcttattaccaccttcacatttttattattttccttcaatcgtttcacatcttctggaccgaagaattcaacgttccaagttgtgttgaaaactcctgtg |
129 |
Q |
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|||||||||||||||||||||| ||||||| ||||||| | |||| ||||||||||||| | | ||||||||| ||||||||||||||| |
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| T |
36095 |
gcttattaccaccttcacatttggattatttcccttcaaatttctcactgcttctggaccgaatgctctagtattccaagtttccttgaaaactcctgtg |
35996 |
T |
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| Q |
130 |
cctcnnnnnnnatcatcatactcctcgcttgcaaagcccaaaatgaagtggaattctgagatattgg |
196 |
Q |
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||| | | ||||||||||| | ||||| ||||||||||||||||||||||||||||||| |
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| T |
35995 |
cctttattttgagcgtcatactcctcagtggcaaatcccaaaatgaagtggaattctgagatattgg |
35929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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