View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0187_low_2 (Length: 458)
Name: NF0187_low_2
Description: NF0187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0187_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 40565778 - 40566069
Alignment:
| Q |
1 |
gtgcattctgagttctgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataa |
100 |
Q |
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| T |
40565778 |
gtgcattctgagttctgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataa |
40565877 |
T |
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| Q |
101 |
atgttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaaggttacaaggagaataaata |
200 |
Q |
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| T |
40565878 |
atgttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaaggttacaaggagaataaata |
40565977 |
T |
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| Q |
201 |
aatactaaacaaaatctaaggatttgtataccgatgaacctgnnnnnnntagcaaagccatggctgtgcactcaaaacaattgctgctgatg |
292 |
Q |
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| T |
40565978 |
aatactaaacaaaatctaaggatttgtataccgatgaacctgaaaaaaatagcaaagccatggctgtgcactcaaaacaattgctgctgatg |
40566069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 40570490 - 40570650
Alignment:
| Q |
16 |
tgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttagacaaaacc |
115 |
Q |
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| T |
40570490 |
tgacctgttctacctttaaatcttaaacaactagttagaaacgttgcaatcactgttgccaaaaactaaagttacattaaaataaatattagac-agacc |
40570588 |
T |
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| Q |
116 |
gtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaa |
180 |
Q |
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| T |
40570589 |
at-cttaatttgatcattcgattccgt--aggaaaaatcagtcattttgatttttctatttttaa |
40570650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 40595253 - 40595321
Alignment:
| Q |
104 |
ttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttct |
172 |
Q |
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| T |
40595253 |
ttagacaaaaccatgtttaatttcatcattccaatctgtacaacaaaaatcattcattttgacttttct |
40595321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 8490224 - 8490271
Alignment:
| Q |
55 |
gacattgcaatcactgttaccaaaaactaaagttacattataataaat |
102 |
Q |
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| T |
8490224 |
gacattgcaatcactgttgccaaaaactaaagttacattataataaat |
8490271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 8490288 - 8490376
Alignment:
| Q |
89 |
acattataataaatgttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaa |
180 |
Q |
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|||||||||||||| ||||||||||| | || ||||||||||||| |||||||| |||||| ||| ||||||||||||||||||| |||| |
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| T |
8490288 |
acattataataaataatagacaaaaccatctt-aatttgatcattcaattccata--ggaaaaatcagtcattttgacttttctatttttaa |
8490376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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