View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0187_low_3 (Length: 318)
Name: NF0187_low_3
Description: NF0187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0187_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 307
Target Start/End: Original strand, 15284251 - 15284528
Alignment:
| Q |
30 |
gacaccgcgaatcgtgacaacttatgttcttaaaagaagtggaatctttaggatcataatatggtccattttgatcaaaacaagcataacaaggaacaca |
129 |
Q |
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| T |
15284251 |
gacaccgcgaatcgtgacaacttatgttcttaaaagaagtggaatctttaggatcataatatggtccattttgatcaaaacaagcataacaaggaacaca |
15284350 |
T |
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| Q |
130 |
ttgaatccagttaagatcactaccggtgtcaagtatcagagaaaaatgttttggtggcgtaccgatgaatacatcgatgaaatactcaccggaaccaaaa |
229 |
Q |
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| T |
15284351 |
ttgaatccagttaagatcactaccggtgtcaagtatcagagaaaaatgttttggtggcgtaccgatgaatacatcgatgaaatactcaccggaaccaaaa |
15284450 |
T |
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| Q |
230 |
cttactcctgattccaaggtggccataagttgagttgaatagtttccggtcaaatattccggtggtgcggcaacagct |
307 |
Q |
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| T |
15284451 |
cttactcctgattccaaggtggccataagctgagttgaatagtttccggtcaaatattccggtggtgcggcaacagct |
15284528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 61 - 270
Target Start/End: Complemental strand, 39712846 - 39712637
Alignment:
| Q |
61 |
aaaagaagtggaatctttaggatcataatatggtccattttgatcaaaacaagcataacaaggaacacattgaatccagttaagatcactaccggtgtca |
160 |
Q |
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||||||| | || |||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||| |||||||||||||| || ||| |
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| T |
39712846 |
aaaagaactagattctttaggatcataatatggaccactttgttcaaaacaagcaatgcaaggaacacattgaatccaattaagatcactaccagtatca |
39712747 |
T |
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| Q |
161 |
agtatcagagaaaaatgttttggtggcgtaccgatgaatacatcgatgaaatactcaccggaaccaaaacttactcctgattccaaggtggccataagtt |
260 |
Q |
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| T |
39712746 |
agtatcaaagaataatgcttaggtggtgtacctataaacacatccatgaaatactcaccagagccaagactcacccctgattccaaagttgccacaagct |
39712647 |
T |
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| Q |
261 |
gagttgaata |
270 |
Q |
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|| ||||||| |
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| T |
39712646 |
gacttgaata |
39712637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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