View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0187_low_5 (Length: 302)

Name: NF0187_low_5
Description: NF0187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0187_low_5
NF0187_low_5
[»] chr1 (7 HSPs)
chr1 (122-302)||(42623961-42624141)
chr1 (99-257)||(31230278-31230436)
chr1 (80-111)||(42624138-42624169)
chr1 (171-256)||(11398288-11398374)
chr1 (177-258)||(52946191-52946273)
chr1 (177-256)||(52935150-52935230)
chr1 (177-256)||(52942785-52942865)
[»] chr6 (3 HSPs)
chr6 (99-256)||(27368781-27368940)
chr6 (99-256)||(27459128-27459287)
chr6 (188-257)||(31600119-31600188)
[»] chr5 (2 HSPs)
chr5 (99-257)||(30803696-30803853)
chr5 (80-256)||(10548172-10548350)
[»] chr3 (3 HSPs)
chr3 (172-256)||(25493495-25493580)
chr3 (188-258)||(6302520-6302590)
chr3 (177-257)||(2146118-2146198)
[»] chr8 (2 HSPs)
chr8 (183-256)||(13881215-13881288)
chr8 (191-257)||(33116833-33116899)
[»] scaffold0590 (1 HSPs)
scaffold0590 (99-258)||(4960-5123)
[»] chr4 (2 HSPs)
chr4 (188-252)||(41380458-41380522)
chr4 (99-162)||(8332566-8332629)
[»] chr7 (4 HSPs)
chr7 (177-258)||(21905936-21906022)
chr7 (171-256)||(47762053-47762139)
chr7 (181-256)||(20290704-20290779)
chr7 (208-256)||(29753389-29753437)
[»] scaffold0036 (1 HSPs)
scaffold0036 (182-225)||(43752-43795)
[»] chr2 (1 HSPs)
chr2 (188-244)||(43453160-43453216)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 122 - 302
Target Start/End: Complemental strand, 42624141 - 42623961
Alignment:
Q  122 aaaacaagaggagaggttaggagaagaatgttgacatcacaatcttctttccttttttccttggctttctcttatttataagagtccacattcagatttt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||     
T  42624141 aaaacaagaggagaggttaggagaagaatgttgacatcacaattttcatgccttttttccttggctttctcttatttataagagtccacattcacatttc 42624042  T
Q  222 ctataatgcccctttcaactctttgactcattacattgattattatggatatcacaattacatcaagagaaacaatcaaac 302  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42624041 ctataatgctcctttcaactctttgactcattacattgattattatggatatcacaatcacatcaagagaaacaatcaaac 42623961  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 99 - 257
Target Start/End: Original strand, 31230278 - 31230436
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcacaatcttctttccttttttccttgg-ctttctcttatt 197  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||  | ||| || | ||||  |||||| ||||    
T  31230278 aattgcagggaaataaggatagtaaaacaagagaagaggttaggaggagaatgttgacatcacaat-ttccatgcttattccattggtttttctcatatt 31230376  T
Q  198 tataagagtccacattcagattttctataatgcccctttcaactctttgactcattacat 257  Q
    |||||| ||||| ||||  |||| | |||| |||||||  ||||||  ||||||||||||    
T  31230377 tataagggtccatattcctatttcccataacgccccttctaactctaagactcattacat 31230436  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 42624169 - 42624138
Alignment:
Q  80 acacacaacgagagagtacaattgcagcaaaa 111  Q
    ||||||||||||||||||||||||||||||||    
T  42624169 acacacaacgagagagtacaattgcagcaaaa 42624138  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 11398288 - 11398374
Alignment:
Q  171 tccttttttccttggcttt-ctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    ||||| ||||||||||||| ||| |||||||||| ||||| ||||  |||||| |||||||| |||  ||||||  |||||||||||    
T  11398288 tccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgccacttctaactctaagactcattaca 11398374  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 52946273 - 52946191
Alignment:
Q  177 tttccttggcttt-ctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattacatt 258  Q
    ||||||||||||| ||| |||||||||| ||||| ||||  |||| | ||||||||||||  ||||||  |||||||||||||    
T  52946273 tttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttctaactctaagactcattacatt 52946191  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 52935230 - 52935150
Alignment:
Q  177 tttccttggcttt-ctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    ||||||||||||| ||| |||||||||| ||||| ||||  |||| | ||||||||||||  |||| || |||||||||||    
T  52935230 tttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttctaacttttagactcattaca 52935150  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 52942865 - 52942785
Alignment:
Q  177 tttccttggcttt-ctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    ||||||||||||| ||| |||||||||| ||||| ||||  |||| | ||||||||||||  |||| || |||||||||||    
T  52942865 tttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttctaacttttagactcattaca 52942785  T

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Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 99 - 256
Target Start/End: Complemental strand, 27368940 - 27368781
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcaca-atcttctttccttttttc-cttggctttctcttat 196  Q
    |||||||  ||||||||||||||||||  |||| || |||||| |||||||||||||||||||| || |||  | | |||||| |||||||||||| |||    
T  27368940 aattgcaagaaaataaggatagtaaaatgagagaagtggttagaagaagaatgttgacatcacacatattccatgcctttttctcttggctttctcgtat 27368841  T
Q  197 ttataagagtccacattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    ||||||||||||||||||| |||| || |||| || ||||||||||||||||||||||||    
T  27368840 ttataagagtccacattcatatttcctgtaatacctctttcaactctttgactcattaca 27368781  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 99 - 256
Target Start/End: Complemental strand, 27459287 - 27459128
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcaca-atcttctttccttttttc-cttggctttctcttat 196  Q
    |||||||  ||||||||||||||||||  |||| || |||||| |||||||||||||||||||| || |||  | | |||||| |||||||||||| |||    
T  27459287 aattgcaagaaaataaggatagtaaaatgagagaagtggttagaagaagaatgttgacatcacacatattccatgcctttttctcttggctttctcgtat 27459188  T
Q  197 ttataagagtccacattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    ||||||||||||||||||| |||| || |||| || ||||||||||||||||||||||||    
T  27459187 ttataagagtccacattcatatttcctgtaatacctctttcaactctttgactcattaca 27459128  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 31600119 - 31600188
Alignment:
Q  188 ttctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattacat 257  Q
    |||||||||| ||||  ||||||||||  |||||||||| ||||| |||||| |||||||||||||||||    
T  31600119 ttctcttattcataaaggtccacattcctattttctatattgcccttttcaattctttgactcattacat 31600188  T

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Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 99 - 257
Target Start/End: Original strand, 30803696 - 30803853
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcacaatcttctttccttttttccttggctttctcttattt 198  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |  | | |||||||||| |||||||||||    
T  30803696 aattgcaggaaaataaggatagtaaaacaagagaagaggttaggagaagaatgttgacatcacaatttccatatcctctttccttggcattctcttattt 30803795  T
Q  199 ataagagtccacattcagattttctataatgcccctttcaactctttgactcattacat 257  Q
    ||||| ||  | ||||| |||| ||||| || |||||| | || |||||||||||||||    
T  30803796 ataagggtttatattcaaatttcctatattg-ccctttaagctatttgactcattacat 30803853  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 80 - 256
Target Start/End: Complemental strand, 10548350 - 10548172
Alignment:
Q  80 acacacaacgagagagtacaattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcaca-atcttctttccttttt 178  Q
    |||||||| || |||||| |||||||| ||||||||||||||||||  |||| ||||||||| |||||||||||||||||||| || |||  | ||| ||    
T  10548350 acacacaatgacagagtaaaattgcaggaaaataaggatagtaaaatgagagaagaggttagaagaagaatgttgacatcacacatattccatacttatt 10548251  T
Q  179 tccttggc-tttctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    |||||||| |||||| |||||||||  ||||| ||||  |||||| ||||||||||||  ||||||  |||||||||||    
T  10548250 tccttggcttttctcatatttataaaggtccatattcctattttccataatgccccttctaactctaagactcattaca 10548172  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 25493580 - 25493495
Alignment:
Q  172 ccttttttccttggctttctcttatttataagagtcc-acattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    ||||||| ||||||||||||||||||||||||||| | || |||| |||||||||| |||||||||||||||||||||||||||||    
T  25493580 cctttttcccttggctttctcttatttataagagttcgacgttcacattttctatattgcccctttcaactctttgactcattaca 25493495  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 6302590 - 6302520
Alignment:
Q  188 ttctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattacatt 258  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||| ||| | |||||||||||||||||||    
T  6302590 ttctcttatttataagagttcacattcatattttctatattgcccttttaagctctttgactcattacatt 6302520  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 2146198 - 2146118
Alignment:
Q  177 tttccttggctttctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattacat 257  Q
    ||||||| || || ||||||||||||| || |||||||| ||||   ||| ||| ||||| ||||||||||||||||||||    
T  2146198 tttcctttgccttatcttatttataagcgttcacattcatatttcaaatattgctcctttaaactctttgactcattacat 2146118  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 13881288 - 13881215
Alignment:
Q  183 tggctttctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    |||| |||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||| |||||||||||||    
T  13881288 tggccttctcttatttataagagtccacattcacattttctatattgctccttttaactccttgactcattaca 13881215  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 33116899 - 33116833
Alignment:
Q  191 tcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattacat 257  Q
    |||| ||||||||||| |||||||| |||| ||||| || || ||||||||||||||||| ||||||    
T  33116899 tcttgtttataagagttcacattcatatttcctatattgtccttttcaactctttgactcgttacat 33116833  T

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Target: scaffold0590 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 4960 - 5123
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcaca-atcttctttccttttttccttggc-tttctcttat 196  Q
    |||||||| ||||||||||||||||||  |||| ||||||||| |||||||||||||||||||| || ||   | ||| |||||||||| |||||| |||    
T  4960 aattgcaggaaaataaggatagtaaaatgagagaagaggttagaagaagaatgttgacatcacacatatttcatgcttatttccttggcttttctcatat 5059  T
Q  197 t--tataagagtccacattcagattttctataatgcccctttcaactctttgactcattacatt 258  Q
    |  |||||| ||||| ||||  |||| | ||||||||||||  ||||||  |||||||||||||    
T  5060 ttatataagggtccatattcctatttcccataatgccccttctaactctaagactcattacatt 5123  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 41380522 - 41380458
Alignment:
Q  188 ttctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcat 252  Q
    ||||||||||||| | |||||||||||| |||||||||| | ||||| |||||||||| ||||||    
T  41380522 ttctcttatttattaaagtccacattcacattttctatattacccctatcaactctttaactcat 41380458  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 8332629 - 8332566
Alignment:
Q  99 aattgcagcaaaataaggatagtaaaacaagaggagaggttaggagaagaatgttgacatcaca 162  Q
    |||||||  |||||||||||| |||||  |||| || ||||||||||||||| |||||||||||    
T  8332629 aattgcatgaaaataaggatattaaaatgagagaagcggttaggagaagaatattgacatcaca 8332566  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 21906022 - 21905936
Alignment:
Q  177 tttccttggctttctcttatttataagagtccacattcagattttc-----tataatgcccctttcaactctttgactcattacatt 258  Q
    |||||||||| |||||||||||||||| |||||| |||| |||| |     |||| ||||| ||||| |||||||||||||||||||    
T  21906022 tttccttggccttctcttatttataagtgtccactttcatatttcctatattatattgcccttttcatctctttgactcattacatt 21905936  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 47762139 - 47762053
Alignment:
Q  171 tccttttttccttggcttt-ctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    ||||| ||||||||||||| ||| |||||||||| ||||| ||||  |||||| ||||||||||||  ||||||  |||||||||||    
T  47762139 tccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgccccttctaactctaagactcattaca 47762053  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 20290704 - 20290779
Alignment:
Q  181 cttggctttctcttatttataagagtccacattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    ||||||||||||||||||||||| ||||| ||||| |||| | ||| |  || ||||| | |||||||||||||||    
T  20290704 cttggctttctcttatttataagggtccatattcatatttaccatattatccttttcagccctttgactcattaca 20290779  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 29753437 - 29753389
Alignment:
Q  208 cacattcagattttctataatgcccctttcaactctttgactcattaca 256  Q
    |||||||| |||||||||| ||||  ||||| |||||||||||||||||    
T  29753437 cacattcatattttctatattgccattttcatctctttgactcattaca 29753389  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 43752 - 43795
Alignment:
Q  182 ttggctttctcttatttataagagtccacattcagattttctat 225  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||    
T  43752 ttggccttctcttatttataagagtccacattcaaatttcctat 43795  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 43453160 - 43453216
Alignment:
Q  188 ttctcttatttataagagtccacattcagattttctataatgcccctttcaactctt 244  Q
    ||||||||||||||||||| |||||||| |||| ||||| || || ||| |||||||    
T  43453160 ttctcttatttataagagttcacattcacatttcctatattgtcctttttaactctt 43453216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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