View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0187_low_6 (Length: 286)

Name: NF0187_low_6
Description: NF0187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0187_low_6
NF0187_low_6
[»] chr5 (10 HSPs)
chr5 (49-175)||(30800893-30801019)
chr5 (170-236)||(30801044-30801110)
chr5 (100-172)||(17064801-17064873)
chr5 (100-152)||(34208449-34208501)
chr5 (100-174)||(36124452-36124527)
chr5 (100-158)||(28906875-28906933)
chr5 (100-158)||(28943270-28943328)
chr5 (100-173)||(4068036-4068109)
chr5 (100-145)||(36104833-36104878)
chr5 (114-150)||(35796041-35796077)
[»] scaffold0025 (1 HSPs)
scaffold0025 (100-174)||(65729-65804)
[»] chr1 (16 HSPs)
chr1 (100-152)||(38851975-38852027)
chr1 (109-174)||(45416130-45416195)
chr1 (100-175)||(6213473-6213549)
chr1 (100-172)||(17058759-17058831)
chr1 (113-168)||(10842013-10842068)
chr1 (100-174)||(13773221-13773296)
chr1 (100-158)||(15390289-15390348)
chr1 (100-174)||(22563439-22563514)
chr1 (100-158)||(16661322-16661380)
chr1 (105-174)||(32589436-32589506)
chr1 (100-142)||(48897059-48897101)
chr1 (100-152)||(36754422-36754475)
chr1 (100-164)||(40375257-40375322)
chr1 (100-152)||(33133873-33133925)
chr1 (113-173)||(47469029-47469089)
chr1 (100-152)||(50119047-50119099)
[»] scaffold0179 (1 HSPs)
scaffold0179 (100-158)||(6046-6105)
[»] chr4 (13 HSPs)
chr4 (100-158)||(39023244-39023303)
chr4 (100-174)||(55238441-55238516)
chr4 (100-174)||(56479170-56479244)
chr4 (100-152)||(29406432-29406484)
chr4 (100-174)||(626924-626999)
chr4 (100-158)||(45849116-45849175)
chr4 (100-138)||(9735073-9735111)
chr4 (100-174)||(40486494-40486568)
chr4 (100-173)||(55055970-55056043)
chr4 (100-152)||(5497226-5497278)
chr4 (100-152)||(17872162-17872214)
chr4 (100-163)||(26919410-26919474)
chr4 (100-152)||(45312199-45312251)
[»] chr2 (10 HSPs)
chr2 (100-158)||(27913412-27913471)
chr2 (100-142)||(2289696-2289738)
chr2 (100-174)||(13773453-13773528)
chr2 (100-174)||(3286999-3287073)
chr2 (106-142)||(7907491-7907527)
chr2 (100-152)||(27444334-27444386)
chr2 (100-152)||(28819548-28819600)
chr2 (100-175)||(40688581-40688657)
chr2 (100-152)||(41185403-41185455)
chr2 (100-152)||(43214429-43214481)
[»] chr8 (13 HSPs)
chr8 (100-142)||(11710370-11710412)
chr8 (100-150)||(18412633-18412683)
chr8 (100-174)||(23178833-23178908)
chr8 (100-174)||(43085165-43085240)
chr8 (100-174)||(22274554-22274628)
chr8 (100-174)||(24458370-24458444)
chr8 (100-164)||(94453-94518)
chr8 (100-152)||(6511458-6511511)
chr8 (100-180)||(39169532-39169613)
chr8 (100-203)||(7381810-7381909)
chr8 (100-175)||(8265320-8265396)
chr8 (104-152)||(15856453-15856501)
chr8 (100-152)||(43847010-43847062)
[»] chr7 (7 HSPs)
chr7 (100-152)||(47194367-47194419)
chr7 (100-158)||(4232286-4232344)
chr7 (100-142)||(25833641-25833683)
chr7 (100-157)||(27424909-27424966)
chr7 (116-164)||(7778955-7779003)
chr7 (100-152)||(12935815-12935867)
chr7 (100-152)||(21066961-21067013)
[»] chr6 (3 HSPs)
chr6 (100-152)||(17534922-17534974)
chr6 (100-158)||(30248-30307)
chr6 (100-138)||(29284356-29284394)
[»] chr3 (7 HSPs)
chr3 (100-174)||(2007025-2007100)
chr3 (100-158)||(53752642-53752701)
chr3 (100-174)||(44764773-44764847)
chr3 (101-142)||(882475-882516)
chr3 (123-168)||(40192215-40192260)
chr3 (100-172)||(42268839-42268912)
chr3 (100-152)||(44685111-44685163)
[»] scaffold0246 (1 HSPs)
scaffold0246 (100-174)||(24433-24507)
[»] scaffold0690 (1 HSPs)
scaffold0690 (100-175)||(3718-3794)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 30800893 - 30801019
Alignment:
Q  49 tacttcttataaatcaattgagaattaaaaaattatataatttnnnnnnnntttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaag 148  Q
    |||||||||||||||||||||||||| |||||||||||| |||        |||||||||||| | ||||||||||||||| ||| ||||||||||| ||    
T  30800893 tacttcttataaatcaattgagaatttaaaaattatatagtttaaactttttttttgtcaagtagtctagtggttagaactcacagaattaaatgtggag 30800992  T
Q  149 aagttgagtgaccgggattcaaaccct 175  Q
    |||||||||| ||||| ||||||||||    
T  30800993 aagttgagtgtccggggttcaaaccct 30801019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 30801044 - 30801110
Alignment:
Q  170 aaccctagcaactgaactaagcttatggggatatataatttaaactttatcaaaatcaaatatgaat 236  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  30801044 aaccctagcaactgaactaagtttatgggaatatataatttaaactttatcaaaatcaaatatgaat 30801110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 17064801 - 17064873
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaac 172  Q
    |||| ||||||| ||||||||| ||||||| ||||||||||||||| |||||| | ||| ||||| |||||||    
T  17064801 ttttggtcaagtagcctagtggctagaactcacacaattaaatgtggagaagtggggtgtccggggttcaaac 17064873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 34208501 - 34208449
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||||||| ||||||||| ||||||| |||||||||| |||| ||||||    
T  34208501 tttttgtcaagtagcctagtggctagaactcacacaattaattgtggagaagt 34208449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 36124527 - 36124452
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| | |||||||||||| || ||||| ||||| |||| |||||| ||||| ||||||||| |||||    
T  36124527 tttttgtcaagtagtctagtggttagagctcacacagttaaattgtggagaagtggagtgtccgggattcgaaccc 36124452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 28906933 - 28906875
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtg 158  Q
    |||||||| ||| ||||| |||||||| | |||||||||||||||| |||||| |||||    
T  28906933 tttttgtctagtagcctattggttagagcatacacaattaaatgtggagaagtggagtg 28906875  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 28943328 - 28943270
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtg 158  Q
    |||||||| ||| ||||| |||||||| | |||||||||||||||| |||||| |||||    
T  28943328 tttttgtctagtagcctattggttagagcatacacaattaaatgtggagaagtggagtg 28943270  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 4068109 - 4068036
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaacc 173  Q
    |||||||||||| || |||||||| || || ||||||||||||||| |||||| | ||| ||||| ||| ||||    
T  4068109 tttttgtcaagtagcgtagtggttggagctcacacaattaaatgtggagaagtggggtgtccggggttcgaacc 4068036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 36104878 - 36104833
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtg 145  Q
    |||||||||||| | | ||||||||||||| |||||||||||||||    
T  36104878 tttttgtcaagtagtccagtggttagaactcacacaattaaatgtg 36104833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 35796077 - 35796041
Alignment:
Q  114 cctagtggttagaacttacacaattaaatgtgaagaa 150  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  35796077 cctagtggttagagcttacacaattaaatgtggagaa 35796041  T

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Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 65729 - 65804
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| |||||||| ||||| || ||||||||||| ||||||||||| ||||| ||||||||| |||||    
T  65729 tttttgtcaagtagcctagtgattagagctcacacaattaaattgtgaagaagtggagtgtccgggattcgaaccc 65804  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 38851975 - 38852027
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||    
T  38851975 tttttgtcaagtagcctagtggctagaactcacacaattaaatgtggagaagt 38852027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 45416130 - 45416195
Alignment:
Q  109 agttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    ||||||||||||||||||  | ||||||||||||||| |||||| | ||| ||||||||| |||||    
T  45416130 agttgcctagtggttagagttcacacaattaaatgtggagaagtggggtgtccgggattcgaaccc 45416195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 6213549 - 6213473
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccct 175  Q
    |||||||||||| | ||||||| ||||||| |||||| |||| ||||||||||| | ||  ||||||||||||||||    
T  6213549 tttttgtcaagtagtctagtggctagaactcacacaatttaattgtgaagaagtggggtatccgggattcaaaccct 6213473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 17058831 - 17058759
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaac 172  Q
    |||||||  ||| |||||||||||||| || |||||||||| |||| |||||| | ||| |||||||||||||    
T  17058831 tttttgtttagtagcctagtggttagagctcacacaattaattgtggagaagtggggtgtccgggattcaaac 17058759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 10842013 - 10842068
Alignment:
Q  113 gcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattc 168  Q
    ||||||||| |||| ||||||||||||||| || |||||| ||||| |||||||||    
T  10842013 gcctagtggatagagcttacacaattaaatatggagaagtggagtgtccgggattc 10842068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 13773296 - 13773221
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| ||||||||| |||| || |||||| |||| |||| |||||| ||||| ||||||||| |||||    
T  13773296 tttttgtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggagtgtccgggattcgaaccc 13773221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 15390348 - 15390289
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 158  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| |||| |||||| |||||    
T  15390348 tttttgtcaagtagcctagtggctagaactcacacaattaaattgtggagaagtggagtg 15390289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 22563514 - 22563439
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| ||||||||| |||| || ||||||||||| |||| |||||| ||||| ||||| ||| |||||    
T  22563514 tttttgtcaagtagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtccggggttcgaaccc 22563439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 16661380 - 16661322
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtg 158  Q
    |||||||| ||| ||||| |||||||| | |||||||||||||||| |||||| |||||    
T  16661380 tttttgtctagtagcctattggttagagcatacacaattaaatgtggagaagtggagtg 16661322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 32589436 - 32589506
Alignment:
Q  105 gtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    ||||||| |||||||||||||| || |||||| |||| |||| |||||| ||||||||||| ||| |||||    
T  32589436 gtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtggagtgaccggggttcgaaccc 32589506  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 48897059 - 48897101
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaat 142  Q
    |||||||||||| |||||||||||||| || ||||||||||||    
T  48897059 tttttgtcaagtagcctagtggttagagctcacacaattaaat 48897101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 36754475 - 36754422
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacaca-attaaatgtgaagaagt 152  Q
    |||||||||||| ||||| ||||||||||| ||||| |||||||||| ||||||    
T  36754475 tttttgtcaagtagcctaatggttagaactcacacatattaaatgtgtagaagt 36754422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 40375257 - 40375322
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccggg 164  Q
    |||||||||||| |||||||||||||| || |||||| |||| |||| |||||| ||||| |||||    
T  40375257 tttttgtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtagagtgtccggg 40375322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 33133873 - 33133925
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||| ||||||| | ||||||| ||||||| |||||||||||| |||||||||    
T  33133873 ttttagtcaagtagtctagtggctagaactcacacaattaaatatgaagaagt 33133925  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 47469029 - 47469089
Alignment:
Q  113 gcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaacc 173  Q
    |||||||||||||| || ||||||||||||||| |||||| | ||| ||||| ||| ||||    
T  47469029 gcctagtggttagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaacc 47469089  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 50119099 - 50119047
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||||||| ||| ||||| |||| || ||||||||||||||| ||||||    
T  50119099 tttttgtcaagtagcccagtggctagagctcacacaattaaatgtggagaagt 50119047  T

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Target: scaffold0179 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 6105 - 6046
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 158  Q
    |||||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||    
T  6105 tttttgtcaagtagcctagtggttagagctcacacaattaaattgtgaagaagtggagtg 6046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 39023303 - 39023244
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 158  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||| |||||| |||||    
T  39023303 tttttgtcaagtagcctagtggctagaacttacacaattaaattgtggagaagtggagtg 39023244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 55238441 - 55238516
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||| || |||| |||||  || |||||||||||    
T  55238441 tttttgtcaagtagcctagtggctagaacttacacaattaaattgtaaaaaagtggagtgttcgagattcaaaccc 55238516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 56479170 - 56479244
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||| ||||||| | ||| ||||| ||| |||||    
T  56479170 tttttgtcaagtagcctagtggttagaactcagacaactaaatgtaaagaagtggggtgtccggggttcgaaccc 56479244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 29406484 - 29406432
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||| ||||||||||||||| || || ||||||||||||||| ||||||    
T  29406484 tttttgtctagttgcctagtggttggagctcacacaattaaatgtggagaagt 29406432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 626924 - 626999
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| |||||||||||||| || |||||| |||| |||| |||||| ||||| ||||| ||| |||||    
T  626924 tttttgtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccc 626999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 45849175 - 45849116
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 158  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| |||| |||||| |||||    
T  45849175 tttttgtcaagtagcctagtggctagaactcacacaattaaattgtggagaagtggagtg 45849116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 9735073 - 9735111
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaatt 138  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  9735073 tttttgtcaagtagcctagtggttagagcttacacaatt 9735111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 40486568 - 40486494
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||| ||| ||| ||||||||| |||| || ||||| |||||||||||||||| ||||| ||||| ||| |||||    
T  40486568 ttttggtctagtagcctagtggctagagctcacacatttaaatgtgaagaagtggagtgtccggggttcgaaccc 40486494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 55056043 - 55055970
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaacc 173  Q
    |||||||||||| || |||||||| || || ||||||||||||||| |||||| | ||| ||||| ||| ||||    
T  55056043 tttttgtcaagtagcgtagtggttggagctcacacaattaaatgtggagaagtggcgtgtccggggttcgaacc 55055970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 5497226 - 5497278
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    ||||||||||||  | ||||||||||| || ||||||||||||||||| ||||    
T  5497226 tttttgtcaagtaacttagtggttagagctcacacaattaaatgtgaaaaagt 5497278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 17872214 - 17872162
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||||||| ||||||||| |||||||  ||||||||||| || ||||||    
T  17872214 tttttgtcaagtagcctagtggctagaactcgcacaattaaatatggagaagt 17872162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 26919410 - 26919474
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgg 163  Q
    |||||||||||| ||||||||| |||| || |||||| |||| ||||||||||| ||||| ||||    
T  26919410 tttttgtcaagtagcctagtggctagagctcacacaatttaattgtgaagaagtggagtgtccgg 26919474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 45312199 - 45312251
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||||||| ||||| ||| |||| || |||||||||||| |||||||||    
T  45312199 tttttgtcaagtagcctattggctagagctcacacaattaaatatgaagaagt 45312251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 27913412 - 27913471
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 158  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||| |||||| |||||    
T  27913412 tttttgtcaagtagcctagtggttagagcttacacaattaaattgtggagaagtggagtg 27913471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 2289738 - 2289696
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaat 142  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  2289738 tttttgtcaagtagcctagtggttagaactcacacaattaaat 2289696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 13773528 - 13773453
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| |||||||||||||| || |||||| |||| |||| |||||| ||||| ||||| ||| |||||    
T  13773528 tttttgtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccc 13773453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 3286999 - 3287073
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| | ||||||| |||| || ||||||||||||||| |||||| ||||  ||||| ||| |||||    
T  3286999 tttttgtcaagtagtctagtggctagagctcacacaattaaatgtggagaagtggagtatccggggttcgaaccc 3287073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 7907491 - 7907527
Alignment:
Q  106 tcaagttgcctagtggttagaacttacacaattaaat 142  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  7907491 tcaagtagcctagtggttagaactcacacaattaaat 7907527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 27444386 - 27444334
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||||||| | |||||| ||||| || ||||| ||||||||||||||||    
T  27444386 tttttgtcaagtagtctagtgattagagctcacacatttaaatgtgaagaagt 27444334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 28819600 - 28819548
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||| ||| |||||||||||  | |||||||||||||||||| ||||||    
T  28819600 tttttgtctagtagcctagtggttgtagcttacacaattaaatgtggagaagt 28819548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 40688581 - 40688657
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccct 175  Q
    ||||| |||||| |||||||||||||| || |||||| |||| |||| |||||| ||||| ||||| ||| ||||||    
T  40688581 tttttttcaagtagcctagtggttagagctcacacaatttaattgtggagaagtagagtgtccggggttcgaaccct 40688657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 41185403 - 41185455
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    ||||||| |||||| |||||||||||| || | ||||||||||||| ||||||    
T  41185403 tttttgttaagttgtctagtggttagagctcatacaattaaatgtgcagaagt 41185455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 43214481 - 43214429
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||| ||| |||||||||||||| || ||||||||||| ||| ||||||    
T  43214481 tttttgtctagtagcctagtggttagagctcacacaattaaacgtggagaagt 43214429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 11710412 - 11710370
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaat 142  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  11710412 tttttgtcaagtagcctagtggttagaactcacacaattaaat 11710370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 18412683 - 18412633
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaa 150  Q
    |||| ||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  18412683 ttttggtctagttgcctagtggttagaactcacataattaaatgtgaagaa 18412633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 23178833 - 23178908
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||| ||||||| ||||||||| |||| || ||||||||||| ||||||||||| ||||| ||||| ||| |||||    
T  23178833 ttttggtcaagtagcctagtggctagagctcacacaattaaattgtgaagaagtggagtgtccggggttcgaaccc 23178908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 43085165 - 43085240
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||| ||||||| |||||||||||||| ||||||||| |||| |||| |||||| ||||| ||||| ||| |||||    
T  43085165 ttttggtcaagtagcctagtggttagagcttacacaatttaattgtggagaagtggagtgtccggggttcgaaccc 43085240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 22274554 - 22274628
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| ||||||||| |||| || |||||||||| |||| |||||| | ||| ||||| ||| |||||    
T  22274554 tttttgtcaagtagcctagtggctagagctcacacaattaattgtggagaagtggggtgtccggggttcgaaccc 22274628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 24458444 - 24458370
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||| ||||||| | ||||||| |||| || ||||||||||||||| |||||||||||  ||||| ||| |||||    
T  24458444 ttttggtcaagtagtctagtggctagagctcacacaattaaatgtggagaagttgagtatccggggttcgaaccc 24458370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 94453 - 94518
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccggg 164  Q
    |||||||||||| |||||||||||||| || |||||| |||| |||| |||||| ||||| |||||    
T  94453 tttttgtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtggagtgtccggg 94518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 6511458 - 6511511
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagt 152  Q
    ||||||||||||||  ||||||||||| || ||||||||||| |||||||||||    
T  6511458 tttttgtcaagttgtttagtggttagagctcacacaattaaattgtgaagaagt 6511511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 39169613 - 39169532
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccctagcaa 180  Q
    |||| ||||||| ||||||||| |||| || ||||||||||| |||| |||||||||||| | ||| ||| ||||| |||||    
T  39169613 ttttggtcaagtagcctagtggctagagctcacacaattaaattgtggagaagttgagtgtctggggttcgaaccccagcaa 39169532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 7381810 - 7381909
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaat-taaatgtgaagaagttgagtgaccgggattcaaaccctagcaactgaactaagcttatggg 198  Q
    |||||||||||| | || |||| ||||||| ||||||| ||| |||| |||||| ||||| ||||||||| |||     ||||| ||||||||| |||||    
T  7381810 tttttgtcaagtagtctggtggctagaactcacacaatataattgtggagaagtggagtgtccgggattcgaac-----caactaaactaagctcatggg 7381904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 8265396 - 8265320
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtgaccgggattcaaaccct 175  Q
    |||| ||||||| ||||||||| |||| || ||||||||||| |||| |||||| ||||| ||||| ||| ||||||    
T  8265396 ttttggtcaagtagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtccggggttcgaaccct 8265320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 15856453 - 15856501
Alignment:
Q  104 tgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||| ||| |||||||||||||| || ||||||||||||||| ||||||    
T  15856453 tgtctagtagcctagtggttagagctcacacaattaaatgtggagaagt 15856501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 43847062 - 43847010
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||| ||| ||||||||| |||| || ||||||||||||||| ||||||    
T  43847062 tttttgtctagtagcctagtggctagagctcacacaattaaatgtggagaagt 43847010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 47194367 - 47194419
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||||||| ||||||||| ||||||| |||||||||| |||| ||||||    
T  47194367 tttttgtcaagtagcctagtggctagaactcacacaattaattgtggagaagt 47194419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 4232286 - 4232344
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtg 158  Q
    |||||||||||| | ||||||  ||||||| ||||||||||| |||||||||| |||||    
T  4232286 tttttgtcaagtagtctagtgactagaactcacacaattaaacgtgaagaagtggagtg 4232344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 25833683 - 25833641
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaat 142  Q
    |||||||||||| ||||||||| |||| |||||||||||||||    
T  25833683 tttttgtcaagtagcctagtggctagagcttacacaattaaat 25833641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 27424966 - 27424909
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagt 157  Q
    |||| ||||||| ||||||||| |||| || ||||||||||||||| |||||| ||||    
T  27424966 ttttggtcaagtagcctagtggctagagctcacacaattaaatgtggagaagtggagt 27424909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 7778955 - 7779003
Alignment:
Q  116 tagtggttagaacttacacaattaaatgtgaagaagttgagtgaccggg 164  Q
    |||||| ||||||| ||||||||||||||| |||||| ||||| |||||    
T  7778955 tagtggctagaactcacacaattaaatgtggagaagtggagtgtccggg 7779003  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 12935867 - 12935815
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||| ||| ||||||||| |||| || ||||||||||||||| ||||||    
T  12935867 tttttgtctagtagcctagtggctagagctcacacaattaaatgtggagaagt 12935815  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 21067013 - 21066961
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||||||| ||||||||| |||| ||  |||||||||||||| ||||||    
T  21067013 tttttgtcaagtagcctagtggctagagctcgcacaattaaatgtggagaagt 21066961  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 17534974 - 17534922
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||||||| ||||||    
T  17534974 tttttgtctagtagcctagtggctagaactcacacaattaaatgtggagaagt 17534922  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 30248 - 30307
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 158  Q
    |||| ||||||| ||||||||| ||||||| ||||||||||| ||||||||||| |||||    
T  30248 ttttggtcaagtagcctagtggctagaactcacacaattaaattgtgaagaagtggagtg 30307  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 29284394 - 29284356
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaatt 138  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  29284394 tttttgtcaagtagcctagtggctagaacttacacaatt 29284356  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 2007025 - 2007100
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||||||| ||||||||| |||| || |||||| |||| |||| |||||| ||||| ||||| |||||||||    
T  2007025 tttttgtcaagtagcctagtggatagagctcacacaatttaattgtggagaagtggagtgtccggggttcaaaccc 2007100  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 53752642 - 53752701
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaa-tgtgaagaagttgagtg 158  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| |||| |||||| |||||    
T  53752642 tttttgtcaagtagcctagtggctagaactcacacaattaaattgtggagaagtggagtg 53752701  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 44764847 - 44764773
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||||||| | | ||||||||| |||| || ||||||||||||||| |||||| ||||| ||||| ||| |||||    
T  44764847 tttttgtctaatagcctagtggctagagctcacacaattaaatgtggagaagtggagtgtccggggttcgaaccc 44764773  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 882516 - 882475
Alignment:
Q  101 ttttgtcaagttgcctagtggttagaacttacacaattaaat 142  Q
    |||||| |||| ||||||||||||||||| ||||||||||||    
T  882516 ttttgttaagtagcctagtggttagaactcacacaattaaat 882475  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 40192260 - 40192215
Alignment:
Q  123 tagaacttacacaattaaatgtgaagaagttgagtgaccgggattc 168  Q
    ||||||| ||||||||||||||| |||||| ||||| |||||||||    
T  40192260 tagaactcacacaattaaatgtggagaagtggagtgtccgggattc 40192215  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 42268912 - 42268839
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaat-gtgaagaagttgagtgaccgggattcaaac 172  Q
    ||||| |||||| |||||||||||||| ||   |||||||||| ||| |||||| ||||| |||||||||||||    
T  42268912 tttttttcaagtagcctagtggttagagctcgtacaattaaattgtggagaagtggagtgtccgggattcaaac 42268839  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 44685111 - 44685163
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagt 152  Q
    |||||||||||| | ||||||| ||||||| |||||||||| |||| ||||||    
T  44685111 tttttgtcaagtagtctagtggctagaactcacacaattaattgtggagaagt 44685163  T

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Target: scaffold0246 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 24507 - 24433
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaattaaatgtgaagaagttgagtgaccgggattcaaaccc 174  Q
    |||| ||| ||| ||||||||| |||| || ||||| |||||||||||||||| ||||| ||||| ||| |||||    
T  24507 ttttggtctagtagcctagtggctagagctcacacatttaaatgtgaagaagtggagtgtccggggttcgaaccc 24433  T

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Target: scaffold0690 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 3794 - 3718
Alignment:
Q  100 tttttgtcaagttgcctagtggttagaacttacacaa-ttaaatgtgaagaagttgagtgaccgggattcaaaccct 175  Q
    |||||||||||| ||||||||| |||| || |||||| |||| |||| |||||| ||||| ||||| ||| ||||||    
T  3794 tttttgtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccct 3718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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