View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0188-INSERTION2 (Length: 712)
Name: NF0188-INSERTION2
Description: NF0188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0188-INSERTION2 |
 | |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 684; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 9 - 712
Target Start/End: Complemental strand, 37957909 - 37957206
Alignment:
| Q |
9 |
caatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaa |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37957909 |
caatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatcgaaagagctggactagaccatgtacgaagaaa |
37957810 |
T |
|
| Q |
109 |
atacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgat |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957809 |
atacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgat |
37957710 |
T |
|
| Q |
209 |
gatgtgaaagattctgatcaacttgaagatttaattggaacacatcatagtaactttggccaagggagtataatcattgtgactaacagagacaagcaag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
37957709 |
gatgtgaaagattctgatcaacttgaagatttaattggaacacatcatagtaactttggccaagggagtagaaccattgtgactaacagagacaagcaag |
37957610 |
T |
|
| Q |
309 |
tgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgcttttaaacaaaacca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37957609 |
tgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgcttttaaacaaaacca |
37957510 |
T |
|
| Q |
409 |
tccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaatttcttcagggcaga |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37957509 |
tccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaatttcttcagggcaga |
37957410 |
T |
|
| Q |
509 |
aaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagcttccccatgatgaaattttcagtgcgttcaagttgagttatgatggacttgacaacg |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37957409 |
aaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagctttcccatgatgaaattttcagtgcgttcaagttgagttatgatggacttgacaacg |
37957310 |
T |
|
| Q |
609 |
agcaaaaggatatatttcttgacatagcttgcttttatggaggagaacttgagaaccgtgtagttcaaacattggattattgtggtttctctactcgcat |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957309 |
agcaaaaggatatatttcttgacatagcttgcttttatagaggagaacttgagaaccgtgtagttcaaacattggattattgtggtttctctactcgcat |
37957210 |
T |
|
| Q |
709 |
tgga |
712 |
Q |
| |
|
|||| |
|
|
| T |
37957209 |
tgga |
37957206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 712
Target Start/End: Original strand, 37929678 - 37930377
Alignment:
| Q |
9 |
caatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaa |
108 |
Q |
| |
|
||||||||||| || || |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
37929678 |
caatctatcatcaattctcaactcagttcagttccaaaagcatcattctaaatgctcaacaagaaatagaaagagctggactacgccatgtacaaagaaa |
37929777 |
T |
|
| Q |
109 |
atacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgat |
208 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||| || ||| ||||||| ||||||||| |||| |||| ||||||||||||||||| |
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| T |
37929778 |
atacttatcacaacttctagaggaagacattacatcctctggattcaagttttcatacattccaaggcttcaacgaggaaaggttctccttgttcttgat |
37929877 |
T |
|
| Q |
209 |
gatgtgaaagattctgatcaacttgaagatttaattggaacacatcatagtaacttt--ggccaagggagtataatcattgtgactaacagagacaagca |
306 |
Q |
| |
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|| ||||| ||||| ||||||||||||| ||||||||| || ||||| |||| |||| ||||||| ||||||||||| || ||||||||||| |
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| T |
37929878 |
gacgtgaacgattcagatcaacttgaaggtttaattgg------tcgtagtacctttttggccttgggagtagaatcattgtgagtagtagagacaagca |
37929971 |
T |
|
| Q |
307 |
agtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgcttttaaacaaaac |
406 |
Q |
| |
|
|||||| |||||| |||||| |||||||||||| |||| | ||||||| || ||||||||||||| |||||||||||| | |||||||||||||||| |
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| T |
37929972 |
agtgcttgagaatgccaatgccgatgaaatatatgaagttagggagatggattttcaagattctctacaactcttctgtttaagtgcttttaaacaaaac |
37930071 |
T |
|
| Q |
407 |
catccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaatttcttcagggca |
506 |
Q |
| |
|
|||||||| || |||||||||| |||||| ||||||||||| |||||||||| || ||||| |||| || ||||||||||| ||| |||| |||| |
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|
| T |
37930072 |
tatccaatataaacttatgtgagcttatcagaaaaggtattaaattatgctaaaggagttccattagctctcaaagttttgggattattgcttcttggca |
37930171 |
T |
|
| Q |
507 |
gaaaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagcttccccatgatgaaattttcagtgcgttcaagttgagttatgatggacttgacaa |
606 |
Q |
| |
|
||| | || |||||||||||||| | ||||||||||||||||||||||| || | ||| ||||| | ||| ||||| |||||||||| ||||||| |
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|
| T |
37930172 |
gaacaaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgttgaagttaagttatgatgaacttgacgg |
37930271 |
T |
|
| Q |
607 |
cgagcaaaaggatatatttcttgacatagcttgcttttatggaggagaacttgagaaccgtgtagttcaaacattggattattgtggtttctctactcgc |
706 |
Q |
| |
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||| ||||||||||||||| ||||||||||||| || ||| ||||| | | ||||| ||||| ||||||||||||| ||||||||||||| ||| | |
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|
| T |
37930272 |
cgaacaaaaggatatatttgttgacatagcttgtttctatagaggacacttggagaatgttgtagcacaaacattggattcttgtggtttctctgctcac |
37930371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 159 - 404
Target Start/End: Complemental strand, 44644572 - 44644330
Alignment:
| Q |
159 |
tttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatcaacttgaagatttaattggaacacatcatag |
258 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||| ||||||||||||||||||||| || |||| ||||||||| |||||||||||||| | | ||| |
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|
| T |
44644572 |
tttcatttgatcaaaggctcaaatggactaaggctctccttgttcttgatgatgttaacaattcggatcaacttagagatttaattggaa---agcttag |
44644476 |
T |
|
| Q |
259 |
taactttggccaagggagtataatcattgtgactaacagagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggt |
358 |
Q |
| |
|
||| |||| | ||| |||| |||||||||||||| |||||||| ||| || || ||||||| ||| ||||||| ||||||| |||| || |||||| | |
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|
| T |
44644475 |
taagtttgcaccaggtagtagaatcattgtgactagcagagacatgcaggtactgaagaatgtcaaagctgatggaatatatgaagtcaaggagatgaat |
44644376 |
T |
|
| Q |
359 |
tctcaagattctctaaaactcttctgttcatttgcttttaaacaaa |
404 |
Q |
| |
|
| ||| || |||||| ||||||||||| | ||| |||||||||| |
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|
| T |
44644375 |
tttcatgaatctctacgactcttctgtttaaatgcctttaaacaaa |
44644330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 259 - 426
Target Start/End: Original strand, 25721504 - 25721671
Alignment:
| Q |
259 |
taactttggccaagggagtataatcattgtgactaacagagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggt |
358 |
Q |
| |
|
|||||||||||| || |||| ||||||| |||||| |||||||| || ||||| ||||||| || | | ||||||||||| |||| || |||||| || |
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|
| T |
25721504 |
taactttggccagggtagtagaatcattatgactagtagagacaaacatgtgcttaagaatgccatttcagatgaaatatacgaagtcaaggagatgtgt |
25721603 |
T |
|
| Q |
359 |
tctcaagattctctaaaactcttctgttcatttgcttttaaacaaaaccatccaatagaaccttatgt |
426 |
Q |
| |
|
| ||||||||| || |||||||| ||| | ||| |||||||||||| |||| ||| || ||||||| |
|
|
| T |
25721604 |
tttcaagattcagtacaactcttcagtttaaatgcctttaaacaaaactatcctataaaagcttatgt |
25721671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 275 - 378
Target Start/End: Original strand, 19869225 - 19869328
Alignment:
| Q |
275 |
agtataatcattgtgactaacagagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaa |
374 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||| || |||||| ||||||||||||||||| |||| ||||||||| || ||||||||||||| |
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|
| T |
19869225 |
agtagaatcattgtgactagtagagacatgcaagtacttaagaatatagatgctgatgaaatatatgaagtgaatgagatgaattttcaagattctctac |
19869324 |
T |
|
| Q |
375 |
aact |
378 |
Q |
| |
|
|||| |
|
|
| T |
19869325 |
aact |
19869328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 642
Target Start/End: Original strand, 19869483 - 19869563
Alignment:
| Q |
562 |
tgaaattttcagtgcgttcaagttgagttatgatggacttgacaacgagcaaaaggatatatttcttgacatagcttgctt |
642 |
Q |
| |
|
||||||||| |||| || || || ||||| ||||| ||||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19869483 |
tgaaatttttggtgccttgaaattaagttacgatgggcttgatgatgagcagaaggatatatttcttgacatagcttgctt |
19869563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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