View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0188-INSERTION7 (Length: 568)
Name: NF0188-INSERTION7
Description: NF0188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0188-INSERTION7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 568
Target Start/End: Original strand, 7407740 - 7408290
Alignment:
| Q |
14 |
aatataaaaagacattgaattcaaaggaaatacnnnnnnnnnnnnaagggattcaaaggaaatacttatattttatgtctaatgatatgatacacattan |
113 |
Q |
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| T |
7407740 |
aatataaaaagacattgaattcaaaggaaatacttttttttt---aagggattcaaaggaaatacttatattttatgtctaatgatatgatacacatgat |
7407836 |
T |
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| Q |
114 |
nnnnnnnnnnnnnggggcacatgatatatgaacatttgacttatattatcatattagtaattgtataaaaaagaaaaattacaagagtgagnnnnnnnga |
213 |
Q |
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| T |
7407837 |
atattttttttt-ggggcacatgatatatgaacatttgacttatattatcatattagtaattgtataaaaaagaaaaattacaagagtgagaaaaaaaga |
7407935 |
T |
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| Q |
214 |
agggatagagtgccttttttgtccctta-ggcttaactgagttgactatgnnnnnnnnnnnnnnnnnnnnngagtcgaggtttaaacctcagattcttaa |
312 |
Q |
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| T |
7407936 |
agggatagagtgccttttttgtcccttttggcttaactgagttgactatgatataacattatatatgtat-gagtcgaggtttaaaccccaaattcttaa |
7408034 |
T |
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| Q |
313 |
tttactcacttaaaaagatgtgaaattataaccacctaactatttgattnnnnnnngtctgcaagtttttcaaaggttggtattttgaacttgcaaatct |
412 |
Q |
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|||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7408035 |
tttactcatttaaaaagatgtaaaattataaccaccaaactatttgattaaaaaaagtctgcaagtttttcaaaggtcggtattttgaacttgcaaatct |
7408134 |
T |
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| Q |
413 |
gcatcgtgtttagtctctgtgttttaagcttagctttgtaacattaattgaaatgcaagtagataccttgatcccttaatcattggtataaaattcgatc |
512 |
Q |
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| T |
7408135 |
gcatcgtgtttagtctctgtgttttaagcttagctttgtaacattaattgaaatgcaagtagataccttgatcccttaatcattggtataaaattcgatc |
7408234 |
T |
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| Q |
513 |
accaattgatacataagaaaaaatgttcattgagaggtcaatactttaaatcgata |
568 |
Q |
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| T |
7408235 |
accaatcgatacatatgaaaaaatgttcattgagaggttaatactttaaatcgata |
7408290 |
T |
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