View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0188-INSERTION8 (Length: 555)
Name: NF0188-INSERTION8
Description: NF0188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0188-INSERTION8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Original strand, 39236686 - 39237232
Alignment:
| Q |
8 |
ctttttctatctagtgagttagctatttgtctatattatgcaagaaatatgtgttataaaacatagcatgatgaactttgttgttttctttgatgtgtcc |
107 |
Q |
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| T |
39236686 |
ctttttctatctagcgagttagctatttgtctatattatgcaagaaatatgtgttataaaacatagcatgatgaaccttgttgttttctttgatgtgtcc |
39236785 |
T |
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| Q |
108 |
atgaattttgttgttgttgacataagcaagaaaatgaatagtatatttgaactttgattttaatataaagaataaagaaagggaacggggagcatatact |
207 |
Q |
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| T |
39236786 |
atgaattttgttgttgttgacataagcaagaaaatgaatagtatatttgaactttgattttaatataaagaataaagaaagggaacggggagcatatact |
39236885 |
T |
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| Q |
208 |
atataagcacgtttgaaaattcatttaggaatcactaaacttagatatctttgtaagaaaatggcaaacttaaacaaagtagtatgcataatatttgtgt |
307 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39236886 |
atataagcacgtctgaaaattcattt-ggaatcactaaacttagatatctttgtaagaaaatggcaaacttaaacaaagtagtatgcataatatttatgt |
39236984 |
T |
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| Q |
308 |
tggtgttattatttaccaagttggaaagtcgttcagttgatgcattcatggagagtaataagaagatcccagccaagtcttgttgccaacaacttattca |
407 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39236985 |
tggtgttattatttaccaagttggaaagtcgttcacttgatgcattcatggagagtaataagaagatcccagccaagtcttgttgccaacaacttattca |
39237084 |
T |
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| Q |
408 |
aaaatcacagtacttgaaagcaagttttgcaaaatcagagcaaaaatttagaaatatctatgactccaaacgacttagtcctcaagggcctgaccctaga |
507 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39237085 |
aaaatcatagtacttgaaagcaagttttgcaaaatcagagcaaaaatttagaaatatctatgactccaaacgacttagtcctcaagggcctgaccctaga |
39237184 |
T |
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| Q |
508 |
caccactgatttctcttattaactatgttttcacactaatccattagt |
555 |
Q |
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| T |
39237185 |
caccactgatttctcttattaactatgttttcacactaatccattagt |
39237232 |
T |
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