View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0188_high_8 (Length: 209)
Name: NF0188_high_8
Description: NF0188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0188_high_8
Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 12640600 - 12640472
Alignment:
Q
1
ggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttcaatggccgttcaactcc
100
Q
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||||
T
12640600
ggccatgggatgcaaacaaagctgctatgtcacccaaaggaatcatatgaccaggtgctagaaatggaagtatgagaagtttcaatggccgttcaactcc
12640501
T
Q
101
gacactaccttccattgctgatcaatttt
129
Q
|||| | |||||||||||||||| ||||
T
12640500
aacaccatcttccattgctgatcagtttt
12640472
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 48963349 - 48963446
Alignment:
Q
1
ggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttcaatggccgttcaact
98
Q
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||||| |||||||||
T
48963349
ggccacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgcaagatatggaatgaagtgaagtttcaatggtcgttcaact
48963446
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 48959207 - 48959290
Alignment:
Q
1
ggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttca
84
Q
||||||||||||||||||||||||||||||||| || || |||||||| ||||||| | || |||||| |||| ||||||||
T
48959207
ggccatgggatgcaaacagagttgctatgtcacacatggggatcatatgcccaggtgctggatatggaatgaagtgaagtttca
48959290
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 48966395 - 48966487
Alignment:
Q
1
ggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttcaatggccgtt
93
Q
||||||| |||||||| | |||||||||||||| || ||| |||||||| || |||| |||| |||||| |||| |||||||| ||| ||||
T
48966395
ggccatgagatgcaaagatagttgctatgtcacacatagggatcatatggcctggtgctagatatggaatgaagtgaagtttcagtggtcgtt
48966487
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 12589306 - 12589219
Alignment:
Q
1
ggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttcaatgg
88
Q
||||| ||||||||||||| ||||| ||||||| | ||| |||||||| |||||||||||| |||||| |||| |||||| |||||
T
12589306
ggccacgggatgcaaacagggttgcaatgtcacatagagggatcatatgcccaggtgatagatatggaatgaagtgaagttttaatgg
12589219
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 12482566 - 12482477
Alignment:
Q
9
gatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttcaatggccgttcaact
98
Q
||||||||||||||||| || | | || ||| |||||||| ||||||| | ||||||||| |||| |||||||||||| |||||||||
T
12482566
gatgcaaacagagttgcaatcttgcacatagggatcatatgcccaggtgctggaaatggaatgaagtgaagtttcaatggtcgttcaact
12482477
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 13449429 - 13449526
Alignment:
Q
1
ggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttcaatggccgttcaact
98
Q
||||| |||||||||||| ||||||||||||| | ||| |||||||| |||| || |||||||||| ||||||| ||||||||| ||||||||
T
13449429
ggccacgggatgcaaacatagttgctatgtcaaaaagagggatcatatgtccagatgcaagaaatggaatgaagtaaactttcaatggttgttcaact
13449526
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 13441266 - 13441359
Alignment:
Q
1
ggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagtaaagtttcaatggccgttc
94
Q
||||| |||||||||||| |||||||||||||| | ||| |||||||| |||| || |||| |||||| |||| || ||||| ||| |||||
T
13441266
ggccacgggatgcaaacatagttgctatgtcacaaagagggatcatatgtccagatgctagatatggaatgaagtgaattttcagtggtcgttc
13441359
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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