View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0188_low_1 (Length: 466)
Name: NF0188_low_1
Description: NF0188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0188_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 63 - 461
Target Start/End: Original strand, 2016089 - 2016487
Alignment:
| Q |
63 |
aaatatgacaattcacacaactttagacattgatctaaagcagccaatgttggaaactttctctgtgtgtccaaggggctctgccacatgtaatcttcac |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2016089 |
aaatatgacaattcacacaactttagacattgatctaaagcagccaatgttggaaactttctctctgtgtccaaggggctctgccacatgtaatcttcac |
2016188 |
T |
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| Q |
163 |
tttcgcacaaacctggcctaaagccttcgtagtcccaggactttgttggcttttattatcaaaatgtccactagtaatatttattcgttttaagggcatt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2016189 |
tttcgcacaaacctggcctaaagccttcgtagtcccaggactttgttggcttttattatcaaaatgtccactagtaatatttattcgttttaagggcatt |
2016288 |
T |
|
| Q |
263 |
gttgactctactggattttatttacgtagccttttcattttagctcctcctatcttttttgtcattttcatattagtgattgcttctcactgagtttata |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2016289 |
gttgactctactggattttatttacgtagccttttcattttagctcctcctatcttttttgtcattttcatattagtgattgcttctgactgagtttata |
2016388 |
T |
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| Q |
363 |
tcaatgtctatatatcattgcctggcagttatttttataatttttagttttatgcacgaaaattagagaggaattgcttctgaatgtatctctgctgct |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
2016389 |
tcaatgtctatatatcattgcctggcagttatttttataatttttagttttatgcacgaaaattagagaggaattgcttctgaatgtatcactgttgct |
2016487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 2019619 - 2019721
Alignment:
| Q |
63 |
aaatatgacaattcacacaactttagacattgatctaaagcagccaatgttggaaactttctctgtgtgtccaaggggctctgccacatgtaatcttcac |
162 |
Q |
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| T |
2019619 |
aaatatgacaattcacacaactttagacattgatctaaagcatccaatgttggaaacattatctttgtgtccaatgggctctgcgacatgtaatcttcac |
2019718 |
T |
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| Q |
163 |
ttt |
165 |
Q |
| |
|
||| |
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|
| T |
2019719 |
ttt |
2019721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 2012911 - 2013013
Alignment:
| Q |
63 |
aaatatgacaattcacacaactttagacattgatctaaagcagccaatgttggaaactttctctgtgtgtccaaggggctctgccacatgtaatcttcac |
162 |
Q |
| |
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||||||||||||||| | |||||| ||||||||| | |||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||| |
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| T |
2012911 |
aaatatgacaattcagagtactttaaacattgatccagagcatccaatgttggaaactttctctttgtgtccaaggggatctgcgacatgtaaacttcac |
2013010 |
T |
|
| Q |
163 |
ttt |
165 |
Q |
| |
|
||| |
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|
| T |
2013011 |
ttt |
2013013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 2014323 - 2014420
Alignment:
| Q |
63 |
aaatatgacaattcacacaactttagacattgatctaaagcagccaatgttggaaactttctctgtgtgtccaaggggctctgccacatgtaatcttcac |
162 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||| | |||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
2014323 |
aaatatgacaattcacactgctttagacattgat---aagtatccaatgttggaaactttctc--tgtgtccaaggggttctgagacatgtaatcttcac |
2014417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 2006730 - 2006786
Alignment:
| Q |
109 |
atgttggaaactttctctgtgtgtccaaggggctctgccacatgtaatcttcacttt |
165 |
Q |
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|||||||||||||||||| | ||||||||||||||||| | |||| |||||||||| |
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| T |
2006730 |
atgttggaaactttctctctatgtccaaggggctctgcgaactgtattcttcacttt |
2006786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 26248706 - 26248639
Alignment:
| Q |
264 |
ttgactctactggattttatttacgtagccttttcattttagctcctcctatcttttttgtcattttc |
331 |
Q |
| |
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|||||||||||| | |||||||| |||||||||||| ||||| ||||||| | |||||||| ||||| |
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| T |
26248706 |
ttgactctactgtaatttatttatgtagccttttcaacttagcccctcctagcatttttgtccttttc |
26248639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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