View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0188_low_4 (Length: 286)
Name: NF0188_low_4
Description: NF0188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0188_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 99 - 270
Target Start/End: Original strand, 43476582 - 43476753
Alignment:
| Q |
99 |
caccaaagtttcctcataataaaggggaagtgtgtaagttgaagaaagccttccatagtctgaaacaagtacatgagcttggtttgagaagttcttcacc |
198 |
Q |
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| T |
43476582 |
caccaaagtttcctcataataaaggggaagtgtgtaagttgaagaaagccttccatagtctgaaacaagtacatgagcttggtttgagaagttcttcacc |
43476681 |
T |
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| Q |
199 |
gtcatttcatttatcgatttttgttctagtgatcatgattttgctttgtttcttatgaccacttcccatgat |
270 |
Q |
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| T |
43476682 |
gtcatttcatttatcgatttttgttctagtgatcatgattttgctttgtttcttaggaccacttcccatgat |
43476753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 9878494 - 9878413
Alignment:
| Q |
111 |
ctcataataaaggggaagtgtgtaagttgaagaaagccttccatagtctgaaacaag-tacatgagcttggtttgagaagtt |
191 |
Q |
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|||||||| ||||||||||||||||||| ||||| | || | ||||||||||||| | | ||||||||||||||||||| |
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| T |
9878494 |
ctcataatcaaggggaagtgtgtaagttaaagaaggttttatacagtctgaaacaagctccgcgagcttggtttgagaagtt |
9878413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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