View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0188_low_6 (Length: 274)
Name: NF0188_low_6
Description: NF0188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0188_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 36574932 - 36575168
Alignment:
| Q |
30 |
ggacgtataacgtgtctggagtcgtggtggcggctttgagaaggtaatcggtactccaccggatagcagctctagcattgtcaatctggtcctgcattga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36574932 |
ggacgtataacgtgtctggagtcgtggtggcggctttgagaaggtaatcggtactccaccggatagcagctctagcattgtcaatctggtcctgcattga |
36575031 |
T |
|
| Q |
130 |
gcttccaaattcaatgacactccatgctaataatgttgtagtaaaagccattggaagcccaaacttaaggttatcaccagcatcataataacctccaatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36575032 |
gcttccaaattcaatgacactccatgctaataatgttgtagtaaaagccattggaagcccaaacttaaggttatcaccagcatcataataacctccaatt |
36575131 |
T |
|
| Q |
230 |
aggtccacctgaaccaatatacatatagagaataatc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36575132 |
aggtccacctgaaccaatatacatatagagaataatc |
36575168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 39419569 - 39419629
Alignment:
| Q |
167 |
gtagtaaaagccattggaagcccaaacttaaggttatcaccagcatcataataacctccaa |
227 |
Q |
| |
|
|||||||||||||| |||| |||||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
39419569 |
gtagtaaaagccataggaaaaccaaacttgacattgtcaccagcatcataataccctccaa |
39419629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1149 times since January 2019
Visitors: 2244