View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0189_low_1 (Length: 341)
Name: NF0189_low_1
Description: NF0189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0189_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 5658205 - 5658373
Alignment:
| Q |
84 |
cagaccaacaagtgttatttggaggaggttaaaaccaacatttgctaatcttcataagcttaaaccattttcttatgcttaagtaagcttctaatagaag |
183 |
Q |
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| T |
5658205 |
cagaccaacaagtgttatttggaggaggttaaaaccaacatttgctaatcttcataagcttaaaccattttcttatgcttaagtaagcttctaatagaag |
5658304 |
T |
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| Q |
184 |
aatctttatagtctagttc-ccttagttttttaattcaaaacgtacataaggcataaagtcgatcaacc |
251 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5658305 |
aatctttatagtctagttcatcttagttttttaattcaaaacgtacataaggcataaagtcgatcaacc |
5658373 |
T |
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