View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0190_low_1 (Length: 451)
Name: NF0190_low_1
Description: NF0190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0190_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 30 - 446
Target Start/End: Original strand, 41776777 - 41777209
Alignment:
| Q |
30 |
ctcttctcattgagatcggtgtcatccctcaggtacagtacatatagacataccctttcacatgcggattggattttgtgcagt---------------- |
113 |
Q |
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| T |
41776777 |
ctcttctcattgagatcggtgtcatccctcaagtacagtatatatagacataccctttcacatgtggattggattttgtgcagtcacagtcccatacagt |
41776876 |
T |
|
| Q |
114 |
cacgcacctatctacatcggtggccattgaatcaagaatggacgtcaagcttggtattttatctggactgttcgatcttaaccaattgccactgatgtgg |
213 |
Q |
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| T |
41776877 |
cacgcacctagctacattggtggccattgaatcaagaatggacgtcaagcttggtattttatctggactgttcgatcttaaccaattgccaccaatgtgg |
41776976 |
T |
|
| Q |
214 |
ctgactgcgtgactgcattagattatgcctacacacaacccaaatctgtttcccaaatcccttcacatgcatgacacagtttgattttaagctaaaaact |
313 |
Q |
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| T |
41776977 |
ctgactgcgtgactgcattagattatgcctacacacaacccaaatctgtttcccaaatcccttcacatgcatgacacagtttgattttaagctaaaaact |
41777076 |
T |
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| Q |
314 |
taagcaatttaacttacaaggattttgattgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctac |
413 |
Q |
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| T |
41777077 |
taagcaatttaacttacaaggattttgattgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctac |
41777176 |
T |
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| Q |
414 |
ctgctcaagaggttccccattccctatgctact |
446 |
Q |
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| T |
41777177 |
ctactcaagaggttccccattccctatggtact |
41777209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 41308303 - 41308348
Alignment:
| Q |
206 |
tgatgtggctgactgcgtgactgcattagattatgcctacacacaa |
251 |
Q |
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| T |
41308303 |
tgatgtggctgactgcgtgactgcatcagattgtgactacatacaa |
41308348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 341 - 430
Target Start/End: Complemental strand, 26957042 - 26956953
Alignment:
| Q |
341 |
attgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctacctgctcaagaggttccc |
430 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||| | |||||||||||||| |
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| T |
26957042 |
attgtaggttgctagtgcaacagcaacatttgtgatgatgttttcatcatctttgtctgtttttgagttctacattctcaagaggttccc |
26956953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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