View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0190_low_2 (Length: 342)
Name: NF0190_low_2
Description: NF0190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0190_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 87 - 308
Target Start/End: Original strand, 24168649 - 24168870
Alignment:
| Q |
87 |
agacattatcgttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacc |
186 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24168649 |
agacattaccgttaactccgaaaataacgtttggttccgtctctttacacccactgttggcggagaagtcgtcggagatggtggtgcaaccaaaacaacc |
24168748 |
T |
|
| Q |
187 |
tcccttcccgttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaa |
286 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
24168749 |
tcccttcccgttgtcattttcttccacggtggtggcttcacctatctttgcccctcctctatctactatgatgctttttgccgtagactctgccgggaaa |
24168848 |
T |
|
| Q |
287 |
tgtctgttgttgttgtctctgt |
308 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
24168849 |
tatccgttgttgttgtctctgt |
24168870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 87 - 287
Target Start/End: Original strand, 24179085 - 24179285
Alignment:
| Q |
87 |
agacattatcgttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacc |
186 |
Q |
| |
|
|||| ||| ||||||| |||||||||| |||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
24179085 |
agacgttaccgttaacgccgaaaataacgtttggtttcgtctctttacccccactgttgccggagaagtcaccggagatggtggtgccaccaaagcaacc |
24179184 |
T |
|
| Q |
187 |
tcccttcccgttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaa |
286 |
Q |
| |
|
|||||||| || |||||||||||||| || || |||| ||| | ||||| || ||||| | | ||| || ||| |||| |||||||||||| |||||| |
|
|
| T |
24179185 |
tcccttcctgtcgtcattttcttccacggcggtggctacacttttctttctccttcctcgaacctctacgacgctgtttgccgtagactctgccgggaaa |
24179284 |
T |
|
| Q |
287 |
t |
287 |
Q |
| |
|
| |
|
|
| T |
24179285 |
t |
24179285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 96 - 287
Target Start/End: Original strand, 24188900 - 24189091
Alignment:
| Q |
96 |
cgttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttccc |
195 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| || ||||||| ||||||||| || |||||||||| | |||||||| |||||||||||| |
|
|
| T |
24188900 |
cgttaactccgaaaacaacctttggttccgtctctttactccaactgttgccggagaagtcaccgaagatggtggttccaccaaaactacctcccttccc |
24188999 |
T |
|
| Q |
196 |
gttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaat |
287 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||| | ||||| | ||||| | | ||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
24189000 |
gtcgtcattttcttccacggtggtggcttcacttttctttcttcttcctcaaacctctacgatgcggtttgtcgtagactctgccgggaaat |
24189091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 24151895 - 24152020
Alignment:
| Q |
160 |
ggagatggtggtgcaaccaaaacaacctcccttcccgttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatg |
259 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| || |||||| |||||| ||||| ||||||| | ||||| ||||||||| ||||| | |||| |
|
|
| T |
24151895 |
ggagatggtggtgccactaaaacaacctcccttcctgtcatcatttacttccacggtggtggcttcagttttctttccccctcctcaatctatcacgatg |
24151994 |
T |
|
| Q |
260 |
ctttttgtcgtagactctgctgggaa |
285 |
Q |
| |
|
|||| || |||||||||||| ||||| |
|
|
| T |
24151995 |
ctttatgccgtagactctgcagggaa |
24152020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 24112531 - 24112584
Alignment:
| Q |
87 |
agacattatcgttaactccgaaaataatgtttggttccgtctctttacacccac |
140 |
Q |
| |
|
|||| ||||||||||| | ||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
24112531 |
agacgttatcgttaacgcagaagataacgtttggttccgtctcttcacacccac |
24112584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1530 times since January 2019
Visitors: 2192