View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0190_low_3 (Length: 297)
Name: NF0190_low_3
Description: NF0190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0190_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 42705970 - 42705690
Alignment:
| Q |
10 |
atgaatagaagcgtcattttggttaaatgcatgaagacaaacttcatagatgtcatcgttcttgataacctgaaaaaacgaagtgttttaaagggagaaa |
109 |
Q |
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| T |
42705970 |
atgaatagaagcgtcattttggttaaatgcatgaagacaaacttcatagatgtcatcgttcttgataacctgaaaaaacgaagtgttttaaagggagaaa |
42705871 |
T |
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| Q |
110 |
atagttcaaacataggaccatatatccaagctcccaactcctaaatgctaagcaacatatgtgacagcacagaaatgccaagtcactcaactctacatac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42705870 |
atagttcaaacataggaccatatatccaagctcccaactcctaaatgctaagcaacatatgtgacagcacagaaatgccaagtcactcaactctacatac |
42705771 |
T |
|
| Q |
210 |
gtttataatgtagnnnnnnngtagcaattaagtattgataaatgtccctcaaagtggcttactttatcagcaacagctagg |
290 |
Q |
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|| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42705770 |
attcataatgtagaaaaaaagtagtaattaagtattgataaatgtccctcaaagtggcttactttatcagcaacagctagg |
42705690 |
T |
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