View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0190_low_4 (Length: 293)
Name: NF0190_low_4
Description: NF0190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0190_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 42848675 - 42848394
Alignment:
| Q |
1 |
tcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42848675 |
tcttgagtagttaaaattaaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgag |
42848576 |
T |
|
| Q |
101 |
agaagcttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgcattaagatc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42848575 |
agaagcttttaacatgccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgcattaagatc |
42848476 |
T |
|
| Q |
201 |
acaaagctggaaggtaaaatgtaaagtatttattattgctaatcgacaagaatgaaaaagaatatgatgatgtccatctcat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
42848475 |
acaaagctggaaggtaaaatgtaaagtatttattattgctaatcgacaagaatgaaaaagaatatcatgatatacatctcat |
42848394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 42855201 - 42854957
Alignment:
| Q |
19 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatacc |
118 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
42855201 |
aaaattaaaattaaagaagacttaaatccctcccaatagtgaaaa-aaaatgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgcc |
42855103 |
T |
|
| Q |
119 |
ctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaagctggaaggtaaa |
218 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
42855102 |
ctcctccaagtgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaa |
42855003 |
T |
|
| Q |
219 |
atgtaaagtatttattattgctaatcgacaagaatgaaaaagaata |
264 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
42855002 |
atgtaaaatatctattattgcggatcgacaagaatgagaaagaata |
42854957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 238
Target Start/End: Complemental strand, 42860884 - 42860697
Alignment:
| Q |
52 |
caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct |
151 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| | ||||||| |||||| |||| ||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
42860884 |
caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcct |
42860785 |
T |
|
| Q |
152 |
ccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaagctgg-aaggtaaaatgtaaagtatttattattg |
238 |
Q |
| |
|
|| | ||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
42860784 |
ccctttctgcatttcagtaattggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg |
42860697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 52 - 238
Target Start/End: Complemental strand, 42856807 - 42856620
Alignment:
| Q |
52 |
caatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctccaagcgttttgaaagatccttaatcct |
151 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| | ||||||| |||||| |||| ||||| |||| ||||||||||||||| ||||| | |
|
|
| T |
42856807 |
caatagtgaaaagaaaattgaaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcatccaggcgttttgaaagatctgtaatctt |
42856708 |
T |
|
| Q |
152 |
ccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaagctgg-aaggtaaaatgtaaagtatttattattg |
238 |
Q |
| |
|
|| | ||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
42856707 |
ccctttctgcatttcagtaattggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg |
42856620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 42853305 - 42853108
Alignment:
| Q |
25 |
aaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacataccctcctc |
124 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||||||||| || ||| |||| |||||||||| ||| ||||||| ||||||||| |||||||| |
|
|
| T |
42853305 |
aaaattaaggaagatttaaatccctcccaatagtgaaaagaaaattaacatgggatccagaaaaaaccttagagagagaatcttttaacaggccctcctc |
42853206 |
T |
|
| Q |
125 |
caagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttg-atgcagttgcattaagatcacaaagctggaaggtaaaatgt |
222 |
Q |
| |
|
|| || ||||||||||||||| ||||||||| ||||||||||| || ||| | ||| |||| |||||| ||| ||| || |||||||||||||||||| |
|
|
| T |
42853205 |
caggcattttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcatagctggaaggtaaaatgt |
42853108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 42855247 - 42855191
Alignment:
| Q |
19 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaat |
75 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
42855247 |
aaaatttaaattaaggaagacttaaatccctcccaatagtgaaaagaaaattaaaat |
42855191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 27350 - 27218
Alignment:
| Q |
107 |
ttttaacataccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaag |
206 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||||||||||||| | || |||||| || ||||||| |||||| || | | ||| || || || |
|
|
| T |
27350 |
ttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaattggctgctgatgccgtcgaaataacgtctcacag |
27251 |
T |
|
| Q |
207 |
ctggaaggtaaaatgtaaagtatttattattgc |
239 |
Q |
| |
|
||| || |||||||||||| |||| |||||||| |
|
|
| T |
27250 |
ctgcaatgtaaaatgtaaaatattaattattgc |
27218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1436 times since January 2019
Visitors: 2192