View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0191_high_12 (Length: 308)
Name: NF0191_high_12
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0191_high_12
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 888641 - 888403
Alignment:
Q
1
gagaagtgaggggaaggcgggaatggtcaccgaatttgtttgccggtggttgatcgttgcaaccggagagaatgctgaggcggttgtacccgagattgaa
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
888641
gagaagtgaggggaaggcgggaatggtcaccgaatttgtttgccggtggttgatcgttgcaaccggagagaatgctgaggcggttgtacccgagattgaa
888542
T
Q
101
ggagttgatgagtttggtggtagtattaggcatactagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggatgtggaaatt
200
Q
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
888541
ggagttgatgagtttgttggtagtattaggcatactagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggatgtggaaatt
888442
T
Q
201
caggtatggaagtttgtttggatctttgtaatcatgatg
239
Q
|||||||||||||||||||||||||||||||||||||||
T
888441
caggtatggaagtttgtttggatctttgtaatcatgatg
888403
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 29857545 - 29857471
Alignment:
Q
161
tttagagggaagaaagttttggttgttggatgtggaaattcaggtatggaagtttgtttggatctttgtaatcat
235
Q
||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||| | | |||||||| ||||||
T
29857545
tttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatctttgcaatcat
29857471
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 17408131 - 17408180
Alignment:
Q
182
gttgttggatgtggaaattcaggtatggaagtttgtttggatctttgtaa
231
Q
|||||||||||||||||||| || |||||||||| | | |||||||||||
T
17408131
gttgttggatgtggaaattctggcatggaagtttctcttgatctttgtaa
17408180
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 32 - 239
Target Start/End: Original strand, 50667712 - 50667919
Alignment:
Q
32
gaatttgtttgccggtggttgatcgttgcaaccggagagaatgctgaggcggttgtacccgagattgaaggagttgatgagtttggtggtagtattaggc
131
Q
|||| |||||| || ||||||||||| || ||||| |||||||| || || ||||| || | |||||||| || ||||| ||||| || ||| ||||
T
50667712
gaatatgtttgtcgttggttgatcgtagcgaccggtgagaatgccgaagctgttgtgcctaatattgaaggcgtagatgaatttggaggagttataaggc
50667811
T
Q
132
atactagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggatgtggaaattcaggtatggaagtttgtttggatctttgtaa
231
Q
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||
T
50667812
atacaagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttgtaa
50667911
T
Q
232
tcatgatg
239
Q
|||||||
T
50667912
ccatgatg
50667919
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 32790024 - 32790122
Alignment:
Q
130
gcatactagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggatgtggaaattcaggtatggaagtttgtttggatctttg
228
Q
|||||||||||||||||| |||||| |||| | || ||||| |||||||| || || |||||||||||||||||||| |||||||| || |||||
T
32790024
gcatactagtttgtataagagtggtagcatgttttgtggcaagaatgttttggtggtggggtgtggaaattcaggtatggaggtttgtttagacctttg
32790122
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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