View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0191_high_13 (Length: 302)
Name: NF0191_high_13
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_high_13 |
 | |
|
| [»] scaffold0176 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 34209117 - 34208860
Alignment:
| Q |
1 |
ctttatactttttcccttgctcaatgttctgtttgtaaaaatattagaaacattagttataaatgacattaannnnnnngtcatatacaaaacaaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34209117 |
ctttatactttttcccttgctcaatgttctgtttgtaaaaatattagaaacattagttataaatgacattaatttttttgtcatatacaaaacaaaatgt |
34209018 |
T |
|
| Q |
101 |
tagaatattaatactcaccatgccccaaaatccaggattggagataccaacaacaccaagtggacatgattgtccttgacaaagaacatctaaacgttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34209017 |
tagaatattaatactcaccatgccccaaaattcaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctaaacgtaaa |
34208918 |
T |
|
| Q |
201 |
gcaaccttattacgctcaaaacaagaggaacgatccgttgatacgataatcgatgatg |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34208917 |
gcaaccttattacgctcaaaacaagaggaacgatcagttgatacgataatcgatgatg |
34208860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 34168907 - 34168650
Alignment:
| Q |
1 |
ctttatactttttcccttgctcaatgttctgtttgtaaaaatattagaaacattagttataaatgacattaannnnnnngtcatatacaaaacaaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34168907 |
ctttatactttttcccttgctcaatgttctgtttgtaaaaatattagaaacattagttataaatgacattaatttttttgtcatatacaaaacaaaatgt |
34168808 |
T |
|
| Q |
101 |
tagaatattaatactcaccatgccccaaaatccaggattggagataccaacaacaccaagtggacatgattgtccttgacaaagaacatctaaacgttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
34168807 |
tagaatattaatactcaccatgccccaaaatccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctgaacgtaaa |
34168708 |
T |
|
| Q |
201 |
gcaaccttattacgctcaaaacaagaggaacgatccgttgatacgataatcgatgatg |
258 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
34168707 |
gcaaccttattacactcaaaacaagatgaacgatcagttgatacgataatcgatgatg |
34168650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 34155122 - 34155255
Alignment:
| Q |
125 |
ccaaaatccaggattggagataccaacaacaccaagtggacatgattgtccttgacaaagaacatctaaacgttaagcaaccttattacgctcaaaacaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
34155122 |
ccaaaatccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctgaacgtaaagcaaccttattacactcaaaacaa |
34155221 |
T |
|
| Q |
225 |
gaggaacgatccgttgatacgataatcgatgatg |
258 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| |
|
|
| T |
34155222 |
gatgaacgatcagttgatacgataatcgatgatg |
34155255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34153660 - 34153783
Alignment:
| Q |
1 |
ctttatactttttcccttgctcaatgttctgtttgtaaaaatattagaaacattagttataaatgacattaannnnnnngtcatatacaaaacaaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34153660 |
ctttatactttttcccttgctcaatgttctgtttgtaaaaatattagaaacattagttataaatgacattaatttttttgtcatatacaaaacaaaatgt |
34153759 |
T |
|
| Q |
101 |
tagaatattaatactcaccatgcc |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34153760 |
tagaatattaatactcaccatgcc |
34153783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 29229 - 28972
Alignment:
| Q |
1 |
ctttatactttttcccttgctcaatgttctgtttgtaaaaatattagaaacattagttataaatgacattaannnnnnngtcatatacaaaacaaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29229 |
ctttatactttttcccttgctcaatgttctgtttgtaaaaatattagaaacattagttataaatgacattaatttttttgtcatatacaaaacaaaatgt |
29130 |
T |
|
| Q |
101 |
tagaatattaatactcaccatgccccaaaatccaggattggagataccaacaacaccaagtggacatgattgtccttgacaaagaacatctaaacgttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
29129 |
tagaatattaatactcaccatgccccaaaatccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctnaacgtaaa |
29030 |
T |
|
| Q |
201 |
gcaaccttattacgctcaaaacaagaggaacgatccgttgatacgataatcgatgatg |
258 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
29029 |
gcaaccttattacnctcaaaacaagatgaacgatcagttgatacgataatcgatgatg |
28972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 38726433 - 38726543
Alignment:
| Q |
119 |
catgccccaaaatccaggattggagataccaacaacaccaagtggacatgattgtccttgacaaagaacatctaaacgttaagcaaccttattacgctca |
218 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||| | | | | ||||| |||| |||||||||||||| ||| | ||| | ||||| |||||||||||| |
|
|
| T |
38726433 |
catgccccaataaccaggattagagataccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
38726532 |
T |
|
| Q |
219 |
aaacaagagga |
229 |
Q |
| |
|
|||| |||||| |
|
|
| T |
38726533 |
aaactagagga |
38726543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1082 times since January 2019
Visitors: 2243