View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0191_high_15 (Length: 272)
Name: NF0191_high_15
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0191_high_15
Alignment Details
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 2820017 - 2820112
Alignment:
Q
35
gcagtgctattctttggaatctctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattat
130
Q
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2820017
gcagtgctattctttggaatctctatcttctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattat
2820112
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 2827187 - 2827283
Alignment:
Q
35
gcagtgctattctttggaatctctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattatc
131
Q
|||||||||||||||||||| |||| | |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||
T
2827187
gcagtgctattctttggaatatctaccttctttgagtttttgtgcattattctctatgcaatctacttccctaagttgaccattgtaaaatattatc
2827283
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 34142336 - 34142275
Alignment:
Q
207
ttactcaatgtactctctctaatatgctctttgtcgtttgtttatattaccatctttccctc
268
Q
||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||
T
34142336
ttactcattgtactatctctaatatgctctttgtcgtttgttgatattaccatcttgccctc
34142275
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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