View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0191_high_2 (Length: 512)

Name: NF0191_high_2
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0191_high_2
NF0191_high_2
[»] chr1 (15 HSPs)
chr1 (257-501)||(45936820-45937065)
chr1 (63-167)||(45937070-45937174)
chr1 (342-401)||(45654430-45654489)
chr1 (444-501)||(45924865-45924919)
chr1 (342-437)||(21681647-21681744)
chr1 (336-415)||(7994758-7994837)
chr1 (338-415)||(15257895-15257972)
chr1 (342-404)||(28005753-28005815)
chr1 (338-388)||(31868903-31868953)
chr1 (342-415)||(7955667-7955740)
chr1 (358-391)||(24470587-24470620)
chr1 (342-391)||(38061692-38061741)
chr1 (360-438)||(48575760-48575840)
chr1 (342-414)||(5205160-5205232)
chr1 (359-438)||(35309043-35309120)
[»] chr7 (18 HSPs)
chr7 (336-430)||(45054805-45054899)
chr7 (342-414)||(17026048-17026120)
chr7 (342-404)||(7539711-7539773)
chr7 (360-406)||(30918966-30919012)
chr7 (336-438)||(8110771-8110875)
chr7 (350-430)||(20259964-20260044)
chr7 (358-438)||(5776589-5776671)
chr7 (336-411)||(8390191-8390266)
chr7 (342-396)||(31490715-31490769)
chr7 (336-414)||(35544218-35544296)
chr7 (342-415)||(20400191-20400264)
chr7 (336-372)||(48633261-48633297)
chr7 (336-391)||(18250719-18250774)
chr7 (336-391)||(28950367-28950426)
chr7 (336-430)||(33899639-33899733)
chr7 (342-391)||(5795567-5795616)
chr7 (358-430)||(26215751-26215823)
chr7 (342-430)||(36926427-36926515)
[»] chr5 (15 HSPs)
chr5 (336-430)||(4983999-4984093)
chr5 (342-430)||(43385816-43385904)
chr5 (366-430)||(15931979-15932043)
chr5 (360-415)||(19283633-19283688)
chr5 (336-414)||(27195435-27195513)
chr5 (342-415)||(26299464-26299537)
chr5 (342-415)||(27451039-27451112)
chr5 (374-415)||(40057860-40057901)
chr5 (342-430)||(26217441-26217529)
chr5 (360-415)||(1841026-1841081)
chr5 (361-415)||(26297942-26297996)
chr5 (360-438)||(3805397-3805477)
chr5 (342-415)||(34724088-34724161)
chr5 (338-415)||(39408733-39408810)
chr5 (342-430)||(11136697-11136785)
[»] chr4 (17 HSPs)
chr4 (336-414)||(46945225-46945303)
chr4 (336-430)||(51409148-51409242)
chr4 (342-414)||(52705611-52705683)
chr4 (342-438)||(49820396-49820494)
chr4 (342-404)||(4275602-4275664)
chr4 (342-415)||(22720762-22720835)
chr4 (336-439)||(43386541-43386651)
chr4 (336-389)||(32398453-32398506)
chr4 (342-415)||(51994101-51994174)
chr4 (336-438)||(53369069-53369178)
chr4 (342-413)||(7505442-7505513)
chr4 (360-438)||(9469463-9469543)
chr4 (342-391)||(25133951-25134000)
chr4 (346-415)||(34135107-34135176)
chr4 (342-391)||(40797172-40797221)
chr4 (360-438)||(50605491-50605571)
chr4 (343-415)||(38493653-38493725)
[»] chr8 (4 HSPs)
chr8 (336-430)||(43966894-43966988)
chr8 (336-391)||(39477430-39477485)
chr8 (342-415)||(17865723-17865796)
chr8 (336-438)||(22563270-22563374)
[»] chr6 (6 HSPs)
chr6 (342-430)||(33109850-33109938)
chr6 (370-417)||(9463742-9463789)
chr6 (360-438)||(7957090-7957170)
chr6 (336-403)||(11460821-11460888)
chr6 (336-391)||(13311360-13311415)
chr6 (342-414)||(7436718-7436790)
[»] chr3 (10 HSPs)
chr3 (336-391)||(40942907-40942962)
chr3 (342-429)||(25252892-25252979)
chr3 (338-391)||(49026005-49026058)
chr3 (342-430)||(5418061-5418149)
chr3 (342-430)||(7029153-7029241)
chr3 (336-388)||(52934238-52934290)
chr3 (336-414)||(30662813-30662891)
chr3 (360-430)||(39943766-39943836)
chr3 (342-404)||(46294297-46294359)
chr3 (369-414)||(7834102-7834147)
[»] scaffold0658 (1 HSPs)
scaffold0658 (358-437)||(6418-6499)
[»] scaffold0106 (1 HSPs)
scaffold0106 (361-430)||(26530-26599)
[»] chr2 (3 HSPs)
chr2 (342-417)||(2647647-2647722)
chr2 (336-438)||(36538084-36538193)
chr2 (340-438)||(39801137-39801237)
[»] scaffold0316 (1 HSPs)
scaffold0316 (361-438)||(18747-18826)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 257 - 501
Target Start/End: Complemental strand, 45937065 - 45936820
Alignment:
Q  257 atattagagtgtcacttaccccactatataatttttacactgtcttcaacattagtattttggaggttaaactaagaccggaaatgagtcgagtcgaact 356  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  45937065 atattagagtgtcacttaccccaccatataatttttacaatgtcttcaacattagtattttgggggttaaactaagaccggaaatgagtagagtcgaact 45936966  T
Q  357 cgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaacttttttcagctcgaaggactttcatgttagag 456  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45936965 cgcctgagctcgactcaactcgataagaattgatttagcttgaaactcaattcgagttcaacaagaacttttttcagctcgaaggactttcatgttagag 45936866  T
Q  457 tttaatcaaacttctcaaattaataatcaaac-tttatgcagtata 501  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  45936865 tttaatcaaacttctcaaattaataatcaaacttttatgcagtata 45936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 45937174 - 45937070
Alignment:
Q  63 aacaaggaagcctcaccttgttaagatagttggttagtaattgttatgagttagttgcacaattagttagcgtagttggagtctaaaaataagaacacaa 162  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45937174 aacaaggaagccgcaccttgttaagatagttggttagtagttgttatgagttagttgcacaattagttagcgtagttggagtctaaaaataagaacacaa 45937075  T
Q  163 atcgc 167  Q
    |||||    
T  45937074 atcgc 45937070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 45654489 - 45654430
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaa 401  Q
    ||||||||||||||  ||||||||||||||| |||||||||||||||||| |||||||||    
T  45654489 gagtcgagtcgaacctgcctgagctcgactcgactcgataagaattggttcagcttgaaa 45654430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 444 - 501
Target Start/End: Complemental strand, 45924919 - 45924865
Alignment:
Q  444 tttcatgttagagtttaatcaaacttctcaaattaataatcaaactttatgcagtata 501  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  45924919 tttcatgttagagtttaatcaaacttctcaaat---taatcaaactttatgcagtata 45924865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 437
Target Start/End: Complemental strand, 21681744 - 21681647
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--ttttttcagctcg 437  Q
    ||||||||||||||  |||||||||| |||| |||||||||||||||||| ||||| ||||||   |||||||| ||| ||||  |||||||||||||    
T  21681744 gagtcgagtcgaacctgcctgagctcaactcgactcgataagaattggttcagcttaaaactcggctcgagttcgacacgaactattttttcagctcg 21681647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 7994758 - 7994837
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||||||||||||||||  |  |||| ||||||||||||||||||||||| || |||| ||||||| | ||||||||    
T  7994758 ggaaatgagtcgagtcgaacctgtttgagttcgactcaactcgataagaattgattcagctcgaaactcgactcgagttc 7994837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 415
Target Start/End: Complemental strand, 15257972 - 15257895
Alignment:
Q  338 aaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    |||||||||||||||||   | |||||||| |||| ||||||||||||||||||  ||| |||||||  |||||||||    
T  15257972 aaatgagtcgagtcgaatctgtctgagctcaactcgactcgataagaattggttcggctcgaaactcggttcgagttc 15257895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 404
Target Start/End: Original strand, 28005753 - 28005815
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactc 404  Q
    ||||||||||||||    ||||||||||||| ||||||||||||||||||  ||| |||||||    
T  28005753 gagtcgagtcgaacctctctgagctcgactcgactcgataagaattggttcggctcgaaactc 28005815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 31868903 - 31868953
Alignment:
Q  338 aaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattg 388  Q
    |||||||||||||| |||||| ||||||||| ||| |||| ||||||||||    
T  31868903 aaatgagtcgagtcaaactcgtctgagctcggctcgactcaataagaattg 31868953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 7955667 - 7955740
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    |||||||||||||   | ||||||||||||| |||| |||||||||||||  ||| |||||||  |||||||||    
T  7955667 gagtcgagtcgaatctgtctgagctcgactcgactcaataagaattggttcggctcgaaactcggttcgagttc 7955740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 24470620 - 24470587
Alignment:
Q  358 gcctgagctcgactcaactcgataagaattggtt 391  Q
    ||||||||||| ||||||||||||||||||||||    
T  24470620 gcctgagctcggctcaactcgataagaattggtt 24470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 38061741 - 38061692
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtt 391  Q
    ||||||||||||||  | |||||||||| || ||||||||||||||||||    
T  38061741 gagtcgagtcgaacctgtctgagctcgattcgactcgataagaattggtt 38061692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 438
Target Start/End: Complemental strand, 48575840 - 48575760
Alignment:
Q  360 ctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaa--cttttttcagctcga 438  Q
    ||||||||||||| ||||||||||||||  |||  || ||||||| | || ||||||||| |||  |||||||||||||||    
T  48575840 ctgagctcgactcgactcgataagaatttatttgactcgaaactcgactcaagttcaacacgaactcttttttcagctcga 48575760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 414
Target Start/End: Complemental strand, 5205232 - 5205160
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagtt 414  Q
    ||||||||||||||  | |||||||||| || |||| |||||||||||||  ||| ||||||| | |||||||    
T  5205232 gagtcgagtcgaacctgtctgagctcgattcgactccataagaattggttcggctcgaaactcgactcgagtt 5205160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 438
Target Start/End: Original strand, 35309043 - 35309120
Alignment:
Q  359 cctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaacttttttcagctcga 438  Q
    ||||||||||  || ||||||||||||||||||  ||| |||||||  ||||||||| ||| ||  ||||||||||||||    
T  35309043 cctgagctcggttcgactcgataagaattggttcggctcgaaactcggttcgagttccacacga--ttttttcagctcga 35309120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 430
Target Start/End: Original strand, 45054805 - 45054899
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||||||||||||||||| | ||||||| | ||| ||||||||||||||||||  ||||||||||| | |||||||||| | |||| |||||    
T  45054805 ggaaatgagtcgagtcgaacttgtctgagcttggctcgactcgataagaattggttcggcttgaaactcgactcgagttcaaaacgaaccttttt 45054899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 414
Target Start/End: Complemental strand, 17026120 - 17026048
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagtt 414  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||||||||  ||| ||||||| | |||||||    
T  17026120 gagtcgagtcgaacttgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagtt 17026048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 7539773 - 7539711
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactc 404  Q
    |||| |||||||||||| ||||||||| ||| |||||||||||||||||| |||| |||||||    
T  7539773 gagttgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactc 7539711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 30918966 - 30919012
Alignment:
Q  360 ctgagctcgactcaactcgataagaattggtttagcttgaaactcaa 406  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||    
T  30918966 ctgagctcgactcaactcgataagaattggttcagctcgaaactcaa 30919012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 438
Target Start/End: Original strand, 8110771 - 8110875
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaa--cttttttcag 433  Q
    |||||||||| |||||||||||| ||||||| | ||| ||| ||||||||||| |  ||||||||||||   |||||||| ||| |||  ||||||||||    
T  8110771 ggaaatgagttgagtcgaactcgtctgagcttggctcgacttgataagaattgttccagcttgaaactcggctcgagttcgacacgaactcttttttcag 8110870  T
Q  434 ctcga 438  Q
    |||||    
T  8110871 ctcga 8110875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 430
Target Start/End: Complemental strand, 20260044 - 20259964
Alignment:
Q  350 tcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||| ||| ||||||||||||| |||||||||||||||||| ||||| ||||||   |||||||| ||| ||||| ||||    
T  20260044 tcgaattcgtctgagctcgactcgactcgataagaattggttcagcttaaaactcggctcgagttcgacacgaactctttt 20259964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 438
Target Start/End: Complemental strand, 5776671 - 5776589
Alignment:
Q  358 gcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--ttttttcagctcga 438  Q
    ||||||||||| ||| |||||||||||||| ||| |||| |||||||   |||||||| ||||||||  ||||||||||||||    
T  5776671 gcctgagctcggctcgactcgataagaattagttcagctcgaaactcggctcgagttcgacaagaactattttttcagctcga 5776589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 8390266 - 8390191
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcga 411  Q
    ||||| |||||||||||| || | ||||||||||||| ||||||||||||| || | |||| ||||||||| ||||    
T  8390266 ggaaacgagtcgagtcgaccttgtctgagctcgactcgactcgataagaatcggctcagctcgaaactcaactcga 8390191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 31490715 - 31490769
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagct 396  Q
    ||||||||||||||||  |||||||| |||||||| |||||||||||||| ||||    
T  31490715 gagtcgagtcgaactcatctgagctctactcaacttgataagaattggttcagct 31490769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 35544296 - 35544218
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagtt 414  Q
    |||||||||||||||| |||  | |||||||||| || ||||||||||||||||||  ||| ||||||| ||| |||||    
T  35544296 ggaaatgagtcgagtcaaacatgtctgagctcgattcgactcgataagaattggttcggctcgaaactcgatttgagtt 35544218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 20400191 - 20400264
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||| ||| |||||| |||||||||||||| ||||| ||| | |||||| ||||||||||||  |||||||||    
T  20400191 gagtctagttgaactcacctgagctcgactcgactcggtaatatttggttcagcttgaaactcggttcgagttc 20400264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 48633261 - 48633297
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactc 372  Q
    ||||||||||||||||||||||| |||||||||||||    
T  48633261 ggaaatgagtcgagtcgaactcgtctgagctcgactc 48633297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 18250774 - 18250719
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtt 391  Q
    ||||| |||||||||| |||| |  |||||||||||| ||||||||||||||||||    
T  18250774 ggaaacgagtcgagtcaaacttgtttgagctcgactcgactcgataagaattggtt 18250719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 28950426 - 28950367
Alignment:
Q  336 ggaaatgagtcgagtcgaactc----gcctgagctcgactcaactcgataagaattggtt 391  Q
    ||||||||||||||||||||      ||||||||||| ||||||||||||||||||||||    
T  28950426 ggaaatgagtcgagtcgaaccaaactgcctgagctcggctcaactcgataagaattggtt 28950367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 33899733 - 33899639
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    |||||||||||||||||||   | || |||||||||| ||||||||||||||| ||  ||| |||||||  |||| |||||| | |||| |||||    
T  33899733 ggaaatgagtcgagtcgaatctgtctcagctcgactcgactcgataagaattgattcggctcgaaactcggttcgggttcaaaacgaaccttttt 33899639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 5795616 - 5795567
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtt 391  Q
    ||||||| ||||||  ||||||||||| ||| ||||||||||||||||||    
T  5795616 gagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggtt 5795567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 26215751 - 26215823
Alignment:
Q  358 gcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||||||| ||| ||||||||||||||||||  ||| |||||||   |||||||| ||| ||||| ||||    
T  26215751 gcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactatttt 26215823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 36926427 - 36926515
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||| ||||||  | ||||||||| ||| ||||||||||||||||||  ||| |||||||   |||||||| ||| ||||| ||||    
T  36926427 gagtcgaatcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactatttt 36926515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 4984093 - 4983999
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    |||||| |||||||| ||||| | ||||||||| ||| |||||||||||||||||| |||||||||||| | |||||||||| | |||| |||||    
T  4984093 ggaaataagtcgagttgaacttgtctgagctcggctcgactcgataagaattggttcagcttgaaactcgactcgagttcaaaacgaaccttttt 4983999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 43385816 - 43385904
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||| |||||||   |||||||| |||  |||||||||    
T  43385816 gagtcgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttcgacacaaactttttt 43385904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 15931979 - 15932043
Alignment:
Q  366 tcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||| |||||||||||||||||| ||||||||||||  ||||||||||||| ||||| ||||    
T  15931979 tcgactcgactcgataagaattggttcagcttgaaactcggttcgagttcaacacgaactctttt 15932043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 19283688 - 19283633
Alignment:
Q  360 ctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||| | ||||||||    
T  19283688 ctgagctcgactcgactcgataagaattggtttagctcgaaactcgactcgagttc 19283633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 414
Target Start/End: Original strand, 27195435 - 27195513
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagtt 414  Q
    ||||||||||||||||||||  | ||||||||||||| |||| |||||||||||||  ||| ||||||| | |||||||    
T  27195435 ggaaatgagtcgagtcgaacatgtctgagctcgactcgactcaataagaattggttcggctcgaaactctactcgagtt 27195513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 26299464 - 26299537
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    |||||||||| |||| | |||||||||| || ||||||||||||||||||  ||| ||||||| | ||||||||    
T  26299464 gagtcgagtcaaacttgtctgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttc 26299537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 27451112 - 27451039
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    |||||||||| |||  | |||||||||| || ||||||||||||||||||  ||| ||||||||| ||||||||    
T  27451112 gagtcgagtcaaacctgtctgagctcgattcgactcgataagaattggttcggctcgaaactcaactcgagttc 27451039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 40057901 - 40057860
Alignment:
Q  374 actcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  40057901 actcgataaaaattggttcagcttgaaactcaattcgagttc 40057860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 26217441 - 26217529
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||||||||||| | |||||||||  || |||| |||||||||||||  ||| ||||||| | |||||||||| | |||| |||||    
T  26217441 gagtcgagtcgaacttgtctgagctcggttcgactcaataagaattggttcggctcgaaactcgactcgagttcaaaacgaaccttttt 26217529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 1841081 - 1841026
Alignment:
Q  360 ctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||||||||| ||||||||||||||||||  ||| ||||||| | ||||||||    
T  1841081 ctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagttc 1841026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 26297942 - 26297996
Alignment:
Q  361 tgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||||| || ||||||||||||||||||  ||| ||||||| ||||||||||    
T  26297942 tgagctcgattcgactcgataagaattggttcggctcgaaactcgattcgagttc 26297996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 438
Target Start/End: Complemental strand, 3805477 - 3805397
Alignment:
Q  360 ctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--ttttttcagctcga 438  Q
    ||||||||| ||| ||||||||||||||||||  ||| |||||||   |||||||| ||| ||||  ||||||||||||||    
T  3805477 ctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcga 3805397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 34724161 - 34724088
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||||||||||  | | |||||||| || |||||||||||||||||| || | ||||||| | ||||||||    
T  34724161 gagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcagttcgaaactcgactcgagttc 34724088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 39408733 - 39408810
Alignment:
Q  338 aaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||||||||||| ||  | | |||||||| || ||||||||||||||||||  ||| ||||||| | ||||||||    
T  39408733 aaatgagtcgagtcgtacctgtccgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttc 39408810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 430
Target Start/End: Complemental strand, 11136785 - 11136697
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||||||||||| | |||| |||| ||| | ||||||||||| ||||  ||| ||||||| | |||||||||| | |||| |||||    
T  11136785 gagtcgagtcgaacttgtctgaactcggctcgattcgataagaataggttcggctcgaaactcgactcgagttcaaaacgaaccttttt 11136697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 46945303 - 46945225
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagtt 414  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||  ||| ||||||| | |||||||    
T  46945303 ggaaatgagtcgagtcgaacctgtctgagctcgactcaactcgataagaattggttcggctcgaaactcgactcgagtt 46945225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 51409242 - 51409148
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    |||||| |||||||||||||| | ||||||||||||| |||||||||||||| |||  ||| ||||||| |||||||||| ||| ||||| ||||    
T  51409242 ggaaataagtcgagtcgaacttgtctgagctcgactcgactcgataagaatttgttcggctcgaaactcgattcgagttcgacacgaactatttt 51409148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 52705611 - 52705683
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagtt 414  Q
    ||||||||||||||| | ||||||||| ||| ||||||||||||||||||  ||| ||||||| |||||||||    
T  52705611 gagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgattcgagtt 52705683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 438
Target Start/End: Original strand, 49820396 - 49820494
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--ttttttcagctcga 438  Q
    ||||||| ||||||  ||||||||||| ||| ||||||||||||||||||  ||| ||||||| | |||||||| ||| ||||  ||||||||||||||    
T  49820396 gagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgacacgaactattttttcagctcga 49820494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 4275664 - 4275602
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactc 404  Q
    |||||||||||||   ||||||||||||||| |||||||||||||||||| |||| |||||||    
T  4275664 gagtcgagtcgaatctgcctgagctcgactcgactcgataagaattggttcagctcgaaactc 4275602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 22720762 - 22720835
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||| ||||||| | ||||||||| ||||||||||||||||||||||  ||| ||||||| || |||||||    
T  22720762 gagtcgaatcgaactagtctgagctcggctcaactcgataagaattggttcggctcgaaactcgatacgagttc 22720835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 439
Target Start/End: Original strand, 43386541 - 43386651
Alignment:
Q  336 ggaaatgagtcgagtcgaactc-----gcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaa--ctttt 428  Q
    |||||||||||||||||||||      | ||||||||||||| |||||||||||||| | |  ||||||||||| | |||||||| ||| |||  |||||    
T  43386541 ggaaatgagtcgagtcgaactgaacctgtctgagctcgactcgactcgataagaatttgctcggcttgaaactcgactcgagttcgacacgaactctttt 43386640  T
Q  429 ttcagctcgaa 439  Q
    |||||||||||    
T  43386641 ttcagctcgaa 43386651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 32398506 - 32398453
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattgg 389  Q
    ||||||||||||||||||||| | ||||||||||||| ||||| ||| ||||||    
T  32398506 ggaaatgagtcgagtcgaacttgtctgagctcgactcgactcgttaaaaattgg 32398453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 51994101 - 51994174
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||| |||||  || ||||||||||||| ||||| |||||||||||| |||| ||||||| | ||||||||    
T  51994101 gagtcgaatcgaatccgtctgagctcgactcgactcgttaagaattggttcagctcgaaactcgactcgagttc 51994174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 438
Target Start/End: Original strand, 53369069 - 53369178
Alignment:
Q  336 ggaaatgagtcgagtcgaac----tc-gcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--tttt 428  Q
    ||||||||||||||||||||    || ||||||| ||| ||||||||||||||||||||||  ||| |||||||   |||||||| ||| ||||  ||||    
T  53369069 ggaaatgagtcgagtcgaaccgaatctgcctgagttcggctcaactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactatttt 53369168  T
Q  429 ttcagctcga 438  Q
    ||||||||||    
T  53369169 ttcagctcga 53369178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 413
Target Start/End: Original strand, 7505442 - 7505513
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagt 413  Q
    ||||||||||||||| | ||||||||| ||| ||||||||||||||| ||  ||| ||||||| | ||||||    
T  7505442 gagtcgagtcgaacttgtctgagctcggctcgactcgataagaattgattcggctcgaaactcgactcgagt 7505513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 438
Target Start/End: Original strand, 9469463 - 9469543
Alignment:
Q  360 ctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--ttttttcagctcga 438  Q
    ||||||||| ||| ||||||||||||||||||  ||| |||||||   |||||||| ||| ||||  ||||||||||||||    
T  9469463 ctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcga 9469543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 25133951 - 25134000
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtt 391  Q
    |||||||||||||   | ||||||||||||| ||||||||||||||||||    
T  25133951 gagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggtt 25134000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 34135176 - 34135107
Alignment:
Q  346 cgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||||||||| | ||| |||| |||| | |||||||||||||| | |||||||||  ||||||||||    
T  34135176 cgagtcgaactcgtccgagttcgattcaaattgataagaattggttcatcttgaaacttgattcgagttc 34135107  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 40797172 - 40797221
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtt 391  Q
    |||||||||||||   | ||||||||||||| ||||||||||||||||||    
T  40797172 gagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggtt 40797221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 438
Target Start/End: Original strand, 50605491 - 50605571
Alignment:
Q  360 ctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--ttttttcagctcga 438  Q
    ||||||||| ||| ||||||||||||||||||  ||| |||||||   |||||||| ||| ||||  ||||||||||||||    
T  50605491 ctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcga 50605571  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 38493725 - 38493653
Alignment:
Q  343 agtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    |||||| ||||||||| ||||| ||||||| || ||||||||||| | |  ||||||||||| | ||||||||    
T  38493725 agtcgaatcgaactcgtctgagttcgactcgacccgataagaattagatcggcttgaaactcgaatcgagttc 38493653  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 430
Target Start/End: Original strand, 43966894 - 43966988
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||||||||||||||||| | |||| |||| ||| ||||||||||||||||||  ||| ||||||| | |||||||||| | ||| ||||||    
T  43966894 ggaaatgagtcgagtcgaacttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaattttttt 43966988  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 39477430 - 39477485
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtt 391  Q
    |||||||||||||||||||   | ||||||||||||| ||||||||||||||||||    
T  39477430 ggaaatgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggtt 39477485  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 17865796 - 17865723
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttc 415  Q
    ||||||||| |||||||  ||||  || |||||||||||||||||||||| |||| ||||||| | ||||||||    
T  17865796 gagtcgagttgaactcgtttgagtccggctcaactcgataagaattggttcagctcgaaactcgactcgagttc 17865723  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 438
Target Start/End: Original strand, 22563270 - 22563374
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaa--cttttttcag 433  Q
    ||||||||||||| |||||   | ||||||||| ||||||||||||||| || | |  ||| ||||||| | |||||||||||| |||  ||||||||||    
T  22563270 ggaaatgagtcgaatcgaatctgtctgagctcggctcaactcgataagattttgctcggctcgaaactcgactcgagttcaacacgaactcttttttcag 22563369  T
Q  434 ctcga 438  Q
    |||||    
T  22563370 ctcga 22563374  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 33109850 - 33109938
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||||||||||| | ||||||||| ||| ||||||||||||||||||  ||| ||||||| | |||||||||| | |||| |||||    
T  33109850 gagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaaccttttt 33109938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 9463789 - 9463742
Alignment:
Q  370 ctcaactcgataagaattggtttagcttgaaactcaattcgagttcaa 417  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  9463789 ctcaactcgattagaattggttcagcttgaaactcaactcgagttcaa 9463742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 438
Target Start/End: Original strand, 7957090 - 7957170
Alignment:
Q  360 ctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--ttttttcagctcga 438  Q
    ||||||||| ||| ||||||||||||||||||  ||| |||||||   |||||||||||| ||||  ||||||||||||||    
T  7957090 ctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcaacacgaactattttttcagctcga 7957170  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 403
Target Start/End: Complemental strand, 11460888 - 11460821
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaact 403  Q
    |||||||||| |||||||||| |  ||| |||||||| | ||||||||||||||||| ||| ||||||    
T  11460888 ggaaatgagttgagtcgaacttgtttgaactcgactcgattcgataagaattggtttggctcgaaact 11460821  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 13311360 - 13311415
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtt 391  Q
    ||||||||||||||||||    | ||||||||||||| ||||||||||||||||||    
T  13311360 ggaaatgagtcgagtcgagtctgtctgagctcgactcgactcgataagaattggtt 13311415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 7436718 - 7436790
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagtt 414  Q
    ||||||| ||||||  | ||||||||||||| |||||||||||| |||||  ||| ||||||| | |||||||    
T  7436718 gagtcgaatcgaacctgtctgagctcgactcgactcgataagaaatggttcggctcgaaactccactcgagtt 7436790  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 40942907 - 40942962
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtt 391  Q
    |||||||||||||||||||   | ||||||||||||||||||||||||||||||||    
T  40942907 ggaaatgagtcgagtcgaatctgtctgagctcgactcaactcgataagaattggtt 40942962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 429
Target Start/End: Original strand, 25252892 - 25252979
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaacttttt 429  Q
    ||||||||||||||  | |||||||| |||| ||||||||||||||||||  |||  |||||| | |||||||||| | |||||||||    
T  25252892 gagtcgagtcgaacctgtctgagctcaactcgactcgataagaattggttcggctcaaaactcgactcgagttcaatacgaacttttt 25252979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 49026005 - 49026058
Alignment:
Q  338 aaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtt 391  Q
    |||||| |||||||||||  || |||||||||||| ||||||||||||||||||    
T  49026005 aaatgaatcgagtcgaacctgcgtgagctcgactcgactcgataagaattggtt 49026058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 5418061 - 5418149
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||||||||||| | ||||| ||| ||  ||||||||||||||||||  ||| ||||||| | |||||||||| | |||| |||||    
T  5418061 gagtcgagtcgaacttgtctgagttcggcttgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaaccttttt 5418149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 7029153 - 7029241
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||| ||||||||||  ||||| ||||||| |||||||||||||| ||| |||| |||||||   |||||||| ||| ||| ||||||    
T  7029153 gagtccagtcgaactcatctgagttcgactcgactcgataagaatttgttcagctcgaaactcggctcgagttcgacacgaattttttt 7029241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 52934238 - 52934290
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattg 388  Q
    |||||||||||||||||||  |  ||||||||||||| |||||||||||||||    
T  52934238 ggaaatgagtcgagtcgaatccatctgagctcgactcgactcgataagaattg 52934290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 30662891 - 30662813
Alignment:
Q  336 ggaaatgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagtt 414  Q
    ||||||||||||||| ||||  | |||||||||| || ||||||||||||||| ||  | | ||||||||| |||||||    
T  30662891 ggaaatgagtcgagttgaacctgtctgagctcgattcgactcgataagaattgattcggttcgaaactcaactcgagtt 30662813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 430
Target Start/End: Complemental strand, 39943836 - 39943766
Alignment:
Q  360 ctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    ||||||||| ||| |||||||||||||||||| |||| |||||||   |||||||  ||| ||||||||||    
T  39943836 ctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagtttgacacgaactttttt 39943766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 46294359 - 46294297
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactc 404  Q
    ||||||||||||||||| ||||||||| ||| || | ||||||||||||| || | |||||||    
T  46294359 gagtcgagtcgaactcgtctgagctcggctcgacgcaataagaattggttcagttcgaaactc 46294297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 7834102 - 7834147
Alignment:
Q  369 actcaactcgataagaattggtttagcttgaaactcaattcgagtt 414  Q
    |||| |||||||||||||||||| ||||  ||||||||||||||||    
T  7834102 actcgactcgataagaattggttcagctcaaaactcaattcgagtt 7834147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 6499 - 6418
Alignment:
Q  358 gcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--ttttttcagctcg 437  Q
    ||||||||||||||| ||||||||||||||||||  | |||||||||   |||||||| ||| ||||  |||||||||||||    
T  6499 gcctgagctcgactcgactcgataagaattggttcgggttgaaactcggctcgagttcgacacgaactattttttcagctcg 6418  T

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Target: scaffold0106 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 430
Target Start/End: Original strand, 26530 - 26599
Alignment:
Q  361 tgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaactttttt 430  Q
    |||||||||||| |||||||||||||||||| |||| |||| || | |||||||| | | ||||||||||    
T  26530 tgagctcgactcgactcgataagaattggttcagctcgaaattcgactcgagttcgaaacgaactttttt 26599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 2647722 - 2647647
Alignment:
Q  342 gagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaa 417  Q
    ||||||||||||| | | |||| |||| ||| ||||||||||||||||||  ||| ||||||| | ||||||||||    
T  2647722 gagtcgagtcgaatttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaa 2647647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 438
Target Start/End: Original strand, 36538084 - 36538193
Alignment:
Q  336 ggaaatgagtcgagtcgaactc-----gcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--tttt 428  Q
    |||||||||||||||||||||      | ||||||||| ||| ||||||||||||||||||  ||| |||||||   |||||||| ||| ||||  ||||    
T  36538084 ggaaatgagtcgagtcgaactgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactatttt 36538183  T
Q  429 ttcagctcga 438  Q
    ||||||||||    
T  36538184 ttcagctcga 36538193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 438
Target Start/End: Original strand, 39801137 - 39801237
Alignment:
Q  340 atgagtcgagtcgaactcgcctgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaa--cttttttcagctcg 437  Q
    ||||||||||| ||||||  ||||||||| ||| |||||| ||||||| ||| |||| |||| ||   |||||||| ||| |||  ||||||||||||||    
T  39801137 atgagtcgagttgaactcatctgagctcggctcgactcgagaagaattagttcagctcgaaattcggctcgagttcgacacgaactcttttttcagctcg 39801236  T
Q  438 a 438  Q
    |    
T  39801237 a 39801237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 438
Target Start/End: Original strand, 18747 - 18826
Alignment:
Q  361 tgagctcgactcaactcgataagaattggtttagcttgaaactcaattcgagttcaacaagaac--ttttttcagctcga 438  Q
    |||||||| ||| ||||||||||||||||||  |||  ||||||  ||||||||| ||| ||||  ||||||||||||||    
T  18747 tgagctcggctcgactcgataagaattggttcggctcaaaactcggttcgagttcgacacgaactattttttcagctcga 18826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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