View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0191_high_3 (Length: 504)
Name: NF0191_high_3
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 30 - 495
Target Start/End: Original strand, 14812138 - 14812605
Alignment:
| Q |
30 |
cttacgaccatttccaaatgttgctattatctctgcatttcccatgtttggttgcaatgatagcttcttaccggcattgattcctagataaaaggacttg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14812138 |
cttacgaccatttccaaatgttgctattatctctgcatttcccatgtttggttgcaatgatagcttcttaccggcattgattcctagataataggacttg |
14812237 |
T |
|
| Q |
130 |
tacttctcatgaagtgctgaaacttcaactggaaggttgcatgatgaatctgtagttctcaataatggccacgaacctgtggtcagaacctgaaaaatta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812238 |
tacttctcatgaagtgctgaaacttcaactggaaggttgcatgatgaatctgtagttctcaataatggccacgaacctgtggtcagaacctgaaaaatta |
14812337 |
T |
|
| Q |
230 |
gttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaatagtgcaaa |
329 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14812338 |
gttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaa |
14812437 |
T |
|
| Q |
330 |
tttgtatccacatattc--ttgagtttaacagcgagacttctctatatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcatttta |
427 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
14812438 |
tttgtaaccacatactcttttgagtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttggaaggtgcttttta |
14812537 |
T |
|
| Q |
428 |
tagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14812538 |
tagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
14812605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 495
Target Start/End: Original strand, 15259133 - 15259600
Alignment:
| Q |
30 |
cttacgaccatttccaaatgttgctattatctctgcatttcccatgtttggttgcaatgatagcttcttaccggcattgattcctagataaaaggacttg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15259133 |
cttacgaccatttccaaatgttgctattatctctgcatttcccatgtttggttgcaatgatagcttcttaccggcattgattcctagataataggacttg |
15259232 |
T |
|
| Q |
130 |
tacttctcatgaagtgctgaaacttcaactggaaggttgcatgatgaatctgtagttctcaataatggccacgaacctgtggtcagaacctgaaaaatta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15259233 |
tacttctcatgaagtgctgaaacttcaactggaaggttgcatgatgaatctgtagttctctataatggccacgaacctgtggtcagaacctgaaaattta |
15259332 |
T |
|
| Q |
230 |
gttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaatagtgcaaa |
329 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15259333 |
gttttggatcatctccttgcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaa |
15259432 |
T |
|
| Q |
330 |
tttgtatccacatattc--ttgagtttaacagcgagacttctctatatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcatttta |
427 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
15259433 |
tttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgtttttccaaacaaaagcctctttgtaaggtgcttttta |
15259532 |
T |
|
| Q |
428 |
tagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15259533 |
tagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
15259600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 35 - 321
Target Start/End: Original strand, 14804723 - 14805009
Alignment:
| Q |
35 |
gaccatttccaaatgttgctattatctctgcatttcccatgtttggttgcaatgatagcttcttaccggcattgattcctagataaaaggacttgtactt |
134 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||| | |||||| |||| |
|
|
| T |
14804723 |
gaccattcccaaatgtcgctattatctctgcatttcccatgtttggttgcaatgatagcttcttatgagtgtggagtcctagataatatgacttggactt |
14804822 |
T |
|
| Q |
135 |
ctcatgaagtgctgaaacttcaactggaaggttgcatgatgaatctgtagttctcaataatggccacgaacctgtggtcagaacctgaaaaattagtttt |
234 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| | ||||||| |
|
|
| T |
14804823 |
ctcatatggtgcagaaacttcaattggaaggttgcatgatgaatctgtagttctcgataatggccacgaacctgtggtcaaaacgtgaacacttagttta |
14804922 |
T |
|
| Q |
235 |
ggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaat |
321 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
14804923 |
ggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
14805009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 35 - 321
Target Start/End: Original strand, 15251717 - 15252003
Alignment:
| Q |
35 |
gaccatttccaaatgttgctattatctctgcatttcccatgtttggttgcaatgatagcttcttaccggcattgattcctagataaaaggacttgtactt |
134 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||| | |||||| |||| |
|
|
| T |
15251717 |
gaccattcccaaatgtcgctattatctctgcatttcccatgtttggttgcaatgatagcttcttatgagtgtggagtcctagataatatgacttggactt |
15251816 |
T |
|
| Q |
135 |
ctcatgaagtgctgaaacttcaactggaaggttgcatgatgaatctgtagttctcaataatggccacgaacctgtggtcagaacctgaaaaattagtttt |
234 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| | ||||||| |
|
|
| T |
15251817 |
ctcatatggtgcagaaacttcaattggaaggttgcatgatgaatctgtagttctcgataatggccacgaacctgtggtcaaaacgtgaacacttagttta |
15251916 |
T |
|
| Q |
235 |
ggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaat |
321 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
15251917 |
ggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
15252003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 30 - 495
Target Start/End: Complemental strand, 17522042 - 17521575
Alignment:
| Q |
30 |
cttacgaccatttccaaatgttgctattatctctgcatttcccatgtttggttgcaatgatagcttcttaccggcattgattcctagataaaaggacttg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17522042 |
cttacgaccatttccaaatgttgctattatctctgcatttcccatgtttggttgcaatgatagcttcttaccggcattgattcctagataataggacttg |
17521943 |
T |
|
| Q |
130 |
tacttctcatgaagtgctgaaacttcaactggaaggttgcatgatgaatctgtagttctcaataatggccacgaacctgtggtcagaacctgaaaaatta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17521942 |
tacttctcatgaagtgctgaaacttcaactggaaggttgcatgatgaatctgtagttctcgacaatggccacgaacctgtggtcagaacctgaaaactta |
17521843 |
T |
|
| Q |
230 |
gttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaatagtgcaaa |
329 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17521842 |
gttttggatcatcacctcgctcagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaa |
17521743 |
T |
|
| Q |
330 |
tttgtatccacatattc--ttgagtttaacagcgagacttctctatatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcatttta |
427 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
17521742 |
tttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgttttgccaaacaaaagcctctttgcaaggtgcttttta |
17521643 |
T |
|
| Q |
428 |
tagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521642 |
tagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
17521575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 786 times since January 2019
Visitors: 2239