View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0191_high_5 (Length: 491)
Name: NF0191_high_5
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 27 - 352
Target Start/End: Complemental strand, 2820342 - 2820017
Alignment:
| Q |
27 |
tcaataaaaccacattgattatcaaaacaaaagattgggggaatgataatgaattaaccattttcttagctgatgtgatccactattttcatacaagaat |
126 |
Q |
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| T |
2820342 |
tcaataaaaccacatggattatcaaaacaaaagattaggggaatgataatgaattaaccattttcttagctgatgtgatccactattttcatacaagaat |
2820243 |
T |
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| Q |
127 |
ctggggatgacagggttagcaataagtttagcacaagttccattacttgttggcttatctcattttgaatcccatcaacggtcaaatcagctgaaacggt |
226 |
Q |
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| T |
2820242 |
ctggggatgacagggttagcaataagtttagcacaagttacattacttgttggcttatctcatcttgaatcccatcaacggtcaaatcagctgaaacggt |
2820143 |
T |
|
| Q |
227 |
tttcaatccttccgaggctgcctttgaatgataatactctacaatggacaacttaggaaagtagattgcatagagaataatgcacaacaactcaaagagg |
326 |
Q |
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||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2820142 |
tttcaatccctccggggctgcctttgaacaataatactctacaatggacaacttaggaaagtagattgcatagagaataatgcacaacaactcaaagaag |
2820043 |
T |
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| Q |
327 |
atagagattccaaagaatagcactgc |
352 |
Q |
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| T |
2820042 |
atagagattccaaagaatagcactgc |
2820017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 147 - 468
Target Start/End: Complemental strand, 2827392 - 2827078
Alignment:
| Q |
147 |
aataagtttagcacaagttccattacttgttggcttatctcattttgaatcccatcaacggtcaaatcagctgaaacggttttcaatccttccgaggctg |
246 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||| ||||||| |
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| T |
2827392 |
aataagtttggcacaagttacattacttgttggcttatctcattttgaatcccagcagctgtcaaatcagctgaaacggttttcgatccttctgaggctg |
2827293 |
T |
|
| Q |
247 |
cctttgaatgataatactctacaatggacaacttaggaaagtagattgcatagagaataatgcacaacaactcaaagaggatagagattccaaagaatag |
346 |
Q |
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|||||||| ||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||| |
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| T |
2827292 |
cctttgaacgataatattttacaatggtcaacttagggaagtagattgcatagagaataatgcacaaaaactcaaagaaggtagatattccaaagaatag |
2827193 |
T |
|
| Q |
347 |
cactgcnnnnnnnnnnnttattggtaaatactaactattaagtctatcatatatgcag-atataacttttagaatggaaaataaatttttgtgagtaaaa |
445 |
Q |
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|||||| ||||| || || |||||||||||| |||||| ||| ||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
2827192 |
cactgc-aaaaaaaaaattattagtgaa-------tattaagtctatgatatattcagcatagaacttttagaatggaaaatatgtttttgtgactaaaa |
2827101 |
T |
|
| Q |
446 |
cttattttgatttatatgttcgc |
468 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
2827100 |
ctgattttgatttatatgttcgc |
2827078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 2827672 - 2827550
Alignment:
| Q |
29 |
aataaaaccacattgattatcaaaacaaaagattgggggaatgataatgaattaaccattttcttagctgatgtgatccactattttcatacaagaatct |
128 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
2827672 |
aataaaaccacatggattattaaaacaaaagattagggaaatgataatgaattaaccattttcctagctgatgtgatccagtattttcatacaagaatcc |
2827573 |
T |
|
| Q |
129 |
gggga----tgacagggttagca |
147 |
Q |
| |
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||||| |||||||||||||| |
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| T |
2827572 |
ggggacaattgacagggttagca |
2827550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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