View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0191_high_8 (Length: 316)
Name: NF0191_high_8
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 3111785 - 3111492
Alignment:
| Q |
1 |
gaaattcctcttgttggtccatttgattcaatggaggacaaaatcttgaaattgagtactaatgagaagggttgtggaaaatgtgacaagaaaagtgaat |
100 |
Q |
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| T |
3111785 |
gaaattcctcttgttggtccatttgattcaatggaggacaaaatcttgaaattgagtactaatgagaagggttgtggaaaatgtgacaagaaaagtgaat |
3111686 |
T |
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| Q |
101 |
ttgcaaaacttgttatgtcaaagagttttgtgttgatatttcatgaactttctatgactggagcaccactttcaatgatggaattggcaactgaattgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111685 |
ttgcaaaacttgttatgtcaaagagttttgtgttgatatttcatgaactttctatgactggagcaccactttcaatgatggaattggcaactgaattgat |
3111586 |
T |
|
| Q |
201 |
gagttgtggagcaaatgtttcagctgttgttcttagcaggaaaggtggtttgatgcaagaacttgtaaggagagaaattaaggtgattgatgat |
294 |
Q |
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| T |
3111585 |
gagttgtggagcaaatgtttcagctgttgttcttagcaggaaaggtggtttgatgcaagaacttgtaaggagagaaattaaggtgattgatgat |
3111492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 26269325 - 26269618
Alignment:
| Q |
1 |
gaaattcctcttgttggtccatttgattcaatggaggacaaaatcttgaaattgagtactaatgagaagggttgtggaaaatgtgacaagaaaagtgaat |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26269325 |
gaaattcctcttgttggtccatttggttcaatggaggacaaaatcttgaaattgagtactaatgagaagggttgtggaaaatgtgacaagaaaagtgaat |
26269424 |
T |
|
| Q |
101 |
ttgcaaaacttgttatgtcaaagagttttgtgttgatatttcatgaactttctatgactggagcaccactttcaatgatggaattggcaactgaattgat |
200 |
Q |
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||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | | |
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| T |
26269425 |
ttgcacaagttgttatgtcaaagagttttgtattgatatttcatgagctttctatgactggagcaccactttcaatgatggagttggcaactgaactttt |
26269524 |
T |
|
| Q |
201 |
gagttgtggagcaaatgtttcagctgttgttcttagcaggaaaggtggtttgatgcaagaacttgtaaggagagaaattaaggtgattgatgat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
26269525 |
gagttgtggagcaaatgtttcagctgttgttcttagcaggaaaggtggtttgatgcaagagcttgttaggagacaaattaaggtgattgatgat |
26269618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 44061562 - 44061684
Alignment:
| Q |
133 |
ttgatatttcatgaactttctatgactggagcaccactttcaatgatggaattggcaactgaattgatgagttgtggagcaaatgtttcagctgttgttc |
232 |
Q |
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|||||||| || || ||||| ||||| ||||| ||||| |||||| ||||||||||||| || | |||| ||||| || | | |||| ||||||| | |
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| T |
44061562 |
ttgatattccacgagctttccatgaccggagctccactctcaatgttggaattggcaacagagcttttgagctgtggtgccactatttcggctgttgcac |
44061661 |
T |
|
| Q |
233 |
ttagcaggaaaggtggtttgatg |
255 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
44061662 |
ttagcaggaaaggtggtttgatg |
44061684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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