View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0191_low_1 (Length: 564)
Name: NF0191_low_1
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 34 - 526
Target Start/End: Original strand, 6314855 - 6315347
Alignment:
| Q |
34 |
gcagaacctgtgaccgttagggaattaaaagcacacaagtggattgcaaaaagggacagaagtcactctttcccttcctacacacagcacctcctaaggc |
133 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6314855 |
gcagaacctgtgactgttagggaattaaaagcacacaagtggattgcaaaaagggccagaagtcactctttcccttcctacacacagcacctcctaaggc |
6314954 |
T |
|
| Q |
134 |
atatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgcag |
233 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6314955 |
atatcttctttgaatggcaagagactacaacagcttaggggaatagtaacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgcag |
6315054 |
T |
|
| Q |
234 |
agtttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttg |
333 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315055 |
aatttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttg |
6315154 |
T |
|
| Q |
334 |
gaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatttggagattaacac |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315155 |
gaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatttggagattaacac |
6315254 |
T |
|
| Q |
434 |
gaggcatatagtagatggaaaaaaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcagatgg |
526 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315255 |
gaggcatatagtagatggaaaagaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcagatgg |
6315347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 283
Target Start/End: Original strand, 6318086 - 6318236
Alignment:
| Q |
133 |
catatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgca |
232 |
Q |
| |
|
|||||||| |||||||| ||||| ||| || || || || | ||||||| |||||||| ||||||||||| ||| ||| || |||||||||||| | |
|
|
| T |
6318086 |
catatcttgtttgaatgccaagaggctataaaagtttgggagtatagtgaaatatgaccttaaattcaaacgtatgtaggt--cagtttcatcatgtgga |
6318183 |
T |
|
| Q |
233 |
gag--tttatttttactgtcatcaacaactgcacaacaatgattatgaatggt |
283 |
Q |
| |
|
||| |||| ||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
6318184 |
gagaatttaattttactgtcatcaacagctgcacaacaaggattatgaatggt |
6318236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 661 times since January 2019
Visitors: 2235