View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0191_low_18 (Length: 338)
Name: NF0191_low_18
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 96 - 299
Target Start/End: Original strand, 7456973 - 7457176
Alignment:
| Q |
96 |
caaagtgctcttttgttttcgtgtcagtttgtcatcgtcaaaacatcaataacgtatagtttgtatatgtaccgatttctaacaattgtgtgtgtcgtaa |
195 |
Q |
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| T |
7456973 |
caaagtgctcttttgtttttgtgtcagtttgtcatcgtcaaaacatcaataacgtatagtttgtatatgtacctatttctaacaattgtgtgtgtcgtaa |
7457072 |
T |
|
| Q |
196 |
atgttaattacaattagtatttataggcagagctcgcatcttgctagttaagacattatggtctacaaaatcttgcttgatcgccgtattcggctattcc |
295 |
Q |
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| T |
7457073 |
atgttaattacaattagtatttataggcagagctcgcatcttgctggttaagacattatggtctacaaaatcttgcttgattgccgtattcggctattcc |
7457172 |
T |
|
| Q |
296 |
caca |
299 |
Q |
| |
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|||| |
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| T |
7457173 |
caca |
7457176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 13219802 - 13219749
Alignment:
| Q |
184 |
tgtgtgtcgtaaatgttaattacaattagtatttataggcagagctcgcatctt |
237 |
Q |
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|||||||| ||||||||| |||||| |||||||||||| ||| |||||||||| |
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| T |
13219802 |
tgtgtgtccaaaatgttaagtacaatgagtatttataggtagaactcgcatctt |
13219749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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