View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0191_low_21 (Length: 317)
Name: NF0191_low_21
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_low_21 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 95 - 317
Target Start/End: Complemental strand, 20390845 - 20390623
Alignment:
| Q |
95 |
aaaagcaccaaccatgccaaaaattccaacaaatccaccaatttgaaaaaatagagattcttatttcttccttctccacaaataaaccatgaccaccaca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20390845 |
aaaagcaccaaccatgccaaaaattccaacaaatccaccaatttgaaaaaatagagattcttatttcttccttctccacaaataaaccatgaccaccaca |
20390746 |
T |
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| Q |
195 |
atagctttatctggtctacgaccttcgatatgttggcaatttccttttcactcgatttggcataggcgtgttattgatgagtactagaataagccgaatg |
294 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20390745 |
atagctttatctggtttacgaccatcgatatgttggcaatttccttttcactcgatttggcataggcgtgttattgatgagtactagaataagccgaatg |
20390646 |
T |
|
| Q |
295 |
tcagtaatgtcataaaccacctc |
317 |
Q |
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||| |||||||||||||||||| |
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| T |
20390645 |
tcacgaatgtcataaaccacctc |
20390623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 128 - 317
Target Start/End: Complemental strand, 20399908 - 20399720
Alignment:
| Q |
128 |
tccaccaatttgaaaaaatagagattcttatttcttccttctccacaaataaaccatgaccaccacaatagctttatctggtctacgaccttcgatatgt |
227 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||| ||||||||||||||| |||| ||||| | | |||| |
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| T |
20399908 |
tccaccaatttgaaaaa-tagagattcttatttcttccttccccgcatataaaccatgaccagaacaatagctttatcttctctatgacctccaaaatgt |
20399810 |
T |
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| Q |
228 |
tggcaatttccttttcactcgatttggcataggcgtgttattgatgagtactagaataagccgaatgtcagtaatgtcataaaccacctc |
317 |
Q |
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| T |
20399809 |
tggcaacttcattttctctctatttgggataggcgcgctattgatgagtgctagaataagccgaaggagacgaatgtcataaaccacctc |
20399720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 23312435 - 23312542
Alignment:
| Q |
128 |
tccaccaatttgaaaaaatagagattcttatttcttccttctccacaaataaaccatgaccaccacaatagctttatctggtctacgaccttcgatatgt |
227 |
Q |
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||||| ||||||||||| || |||||||||||||||| || ||| |||||||||||||||| ||||| | |||||| | ||||| || || || |||| |
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| T |
23312435 |
tccacaaatttgaaaaa-taaagattcttatttcttcttttcccaaaaataaaccatgaccatgacaatcgttttatccgatctacaacttttgaaatgt |
23312533 |
T |
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| Q |
228 |
tggcaattt |
236 |
Q |
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|| |||||| |
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| T |
23312534 |
tgacaattt |
23312542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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