View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0191_low_27 (Length: 310)

Name: NF0191_low_27
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0191_low_27
NF0191_low_27
[»] chr8 (1 HSPs)
chr8 (13-305)||(34860151-34860443)
[»] chr4 (1 HSPs)
chr4 (35-126)||(40273014-40273105)


Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 34860443 - 34860151
Alignment:
13 tgagatatctttaaaagacattgatcaagttgccaagagctcatttcctctgtgcatgcgtcacctgtttgataaggtaagagatcagtcataaactacg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34860443 tgagatatctttaaaagacattgatcaagttgccaagagctcatttcctctgtgcatgcgtcacctgtttgataaggtaagagatcagtcataaactacg 34860344  T
113 atccatatattgtgtttctcaattctcacactgcagttcatttttaatttcnnnnnnnncttcttaactcatcttttataacgagtcttcattttgtcct 212  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
34860343 atccatatattgtgtttctcaattctcactctgcagttcatttttaatttcttttttttcttcttaactcatcttttataacgagtcttcattttgtcct 34860244  T
213 tttcttgtctcatctgtcctgactcttgatttatgccacccttatgcagctgaaagaggaccatcatttaaagcacggtggaaggatgcaact 305  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
34860243 tttcttgtctcatctgtcctgactcttgatttatgccacccttgtgcagctgaaagaggaccatcatttaaagcacggtggaaggatgcaact 34860151  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 40273014 - 40273105
Alignment:
35 gatcaagttgccaagagctcatttcctctgtgcatgcgtcacctgtttgataaggtaagagatcagtcataaactacgatccatatattgtg 126  Q
    |||||||||||||| | ||||||||||  || ||  | |||| ||||||||||||  |||||||| |||||||||| |||||||||||||||    
40273014 gatcaagttgccaataactcatttccttggtacacacatcacttgtttgataaggctagagatcaatcataaactatgatccatatattgtg 40273105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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