View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0191_low_28 (Length: 308)
Name: NF0191_low_28
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 888641 - 888403
Alignment:
| Q |
1 |
gagaagtgaggggaaggcgggaatggtcaccgaatttgtttgccggtggttgatcgttgcaaccggagagaatgctgaggcggttgtacccgagattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
888641 |
gagaagtgaggggaaggcgggaatggtcaccgaatttgtttgccggtggttgatcgttgcaaccggagagaatgctgaggcggttgtacccgagattgaa |
888542 |
T |
|
| Q |
101 |
ggagttgatgagtttggtggtagtattaggcatactagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggatgtggaaatt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
888541 |
ggagttgatgagtttgttggtagtattaggcatactagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggatgtggaaatt |
888442 |
T |
|
| Q |
201 |
caggtatggaagtttgtttggatctttgtaatcatgatg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
888441 |
caggtatggaagtttgtttggatctttgtaatcatgatg |
888403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 29857545 - 29857471
Alignment:
| Q |
161 |
tttagagggaagaaagttttggttgttggatgtggaaattcaggtatggaagtttgtttggatctttgtaatcat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||| | | |||||||| |||||| |
|
|
| T |
29857545 |
tttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatctttgcaatcat |
29857471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 17408131 - 17408180
Alignment:
| Q |
182 |
gttgttggatgtggaaattcaggtatggaagtttgtttggatctttgtaa |
231 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| | | ||||||||||| |
|
|
| T |
17408131 |
gttgttggatgtggaaattctggcatggaagtttctcttgatctttgtaa |
17408180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 32 - 239
Target Start/End: Original strand, 50667712 - 50667919
Alignment:
| Q |
32 |
gaatttgtttgccggtggttgatcgttgcaaccggagagaatgctgaggcggttgtacccgagattgaaggagttgatgagtttggtggtagtattaggc |
131 |
Q |
| |
|
|||| |||||| || ||||||||||| || ||||| |||||||| || || ||||| || | |||||||| || ||||| ||||| || ||| |||| |
|
|
| T |
50667712 |
gaatatgtttgtcgttggttgatcgtagcgaccggtgagaatgccgaagctgttgtgcctaatattgaaggcgtagatgaatttggaggagttataaggc |
50667811 |
T |
|
| Q |
132 |
atactagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggatgtggaaattcaggtatggaagtttgtttggatctttgtaa |
231 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
50667812 |
atacaagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttgtaa |
50667911 |
T |
|
| Q |
232 |
tcatgatg |
239 |
Q |
| |
|
||||||| |
|
|
| T |
50667912 |
ccatgatg |
50667919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 32790024 - 32790122
Alignment:
| Q |
130 |
gcatactagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggatgtggaaattcaggtatggaagtttgtttggatctttg |
228 |
Q |
| |
|
|||||||||||||||||| |||||| |||| | || ||||| |||||||| || || |||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
32790024 |
gcatactagtttgtataagagtggtagcatgttttgtggcaagaatgttttggtggtggggtgtggaaattcaggtatggaggtttgtttagacctttg |
32790122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 937 times since January 2019
Visitors: 2241