View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0191_low_3 (Length: 534)
Name: NF0191_low_3
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 30 - 483
Target Start/End: Original strand, 882804 - 883254
Alignment:
| Q |
30 |
caggcaacatagaaactaaaggtgttgtaagtagtctgtttgcacatgcctatattattcgacccttcttctaaacaaaaacccgacaagaaatcacaag |
129 |
Q |
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| T |
882804 |
caggcaacatagaaactaaaggtgttgtaagtagtctgtttgcacatgcctatatt---cgacccttcttctaaacaaaaacccgacaagaaatcacaag |
882900 |
T |
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| Q |
130 |
tagtagcaagcagtatcattaatcaaaatgattagagggtaatggaaaacaagactaggtcaggttgatgatgatagttggtcacacacaaatgcatcta |
229 |
Q |
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| T |
882901 |
tagtagcaagcagtatcattaatcaaaatgattagagggtaatggaaaacaagactaggtcaggttgatgatgatagttggtcacacacaaatgcatcta |
883000 |
T |
|
| Q |
230 |
gtgcgttatttattactattatagtttcatggtacaccaaagtaactaggaggagtcttcgatgctagcaaatacctccaattcattccctgcatataca |
329 |
Q |
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| T |
883001 |
gtgcgttatttattactattatagtttcatggtacaccaaagtaactaggaggagtcttcgatgctagcaaatacctccaattcattccctgcatatact |
883100 |
T |
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| Q |
330 |
attaaaattaggggatcatcccataatttcagtaaattatagtacaaaaattactaattaattagtcttgattaccatcagggtcatagaagaaaactcg |
429 |
Q |
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| T |
883101 |
attaaaattaggggatcatcccataatttcagtaaattatagtacaaaaattactaattaattagtcttgattaccatcagggtcatagaagaaaactcg |
883200 |
T |
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| Q |
430 |
tttgatgttgccattagtagtctcaaaagtctcaatacccttgttctgtaaatg |
483 |
Q |
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| T |
883201 |
tttgatgttgccattagtagtctcaaaagtctcaatacccttgtcctgtaaatg |
883254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 880561 - 880606
Alignment:
| Q |
401 |
ttaccatcagggtcatagaagaaaactcgtttgatgttgccattag |
446 |
Q |
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| T |
880561 |
ttaccatcagggtcaaaaaagaaaacttgtttgattttgccattag |
880606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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