View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0191_low_30 (Length: 298)
Name: NF0191_low_30
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_low_30 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 13219486 - 13219764
Alignment:
| Q |
1 |
caacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13219486 |
caacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggatttatta |
13219585 |
T |
|
| Q |
101 |
tgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaaga |
200 |
Q |
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| T |
13219586 |
tgacaggggcttttgctcatggagcgatattttttattcgggattacaatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaaga |
13219685 |
T |
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| Q |
201 |
agctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccatgatgatgtc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13219686 |
agctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccataatgatgtc |
13219764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 47842098 - 47842150
Alignment:
| Q |
40 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcagg |
92 |
Q |
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| T |
47842098 |
caagactttactactcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 47842174 - 47842226
Alignment:
| Q |
35 |
tagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
87 |
Q |
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| T |
47842174 |
tagcacaggattttactactcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
108 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
168 |
Q |
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| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 10996399 - 10996673
Alignment:
| Q |
1 |
caacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttatta |
100 |
Q |
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||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
10996399 |
caacacatgtactctttacctacttatgcgtttatagcgcaagactttacagctcaagctgcggtatatactcatcatcaattcattgcaggatttatta |
10996498 |
T |
|
| Q |
101 |
tgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaaga |
200 |
Q |
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| T |
10996499 |
tgacatgagcttttgctcatggaacgata-tttttatttgagattacaatcccgaacataatgagaataatgtattggca--gatgttagagcacaaaga |
10996595 |
T |
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| Q |
201 |
agctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccatgatgatgt |
278 |
Q |
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| T |
10996596 |
agctatcatatcccatttaagttgagccatcctatttctagggttccatactttgggactttatgtccataatgatgt |
10996673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 3065837 - 3065875
Alignment:
| Q |
51 |
tactcaagctgcgttatatactcatcatcaatacattgc |
89 |
Q |
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| T |
3065837 |
tactcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 238223 - 237958
Alignment:
| Q |
1 |
caacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttatta |
100 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || || || | |
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| T |
238223 |
caacatatgtactctttacctccttatgcattcatagcacaagactttactactcaagctgctttatatactcatcaccaatatattgcggggttcatca |
238124 |
T |
|
| Q |
101 |
tgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaaga |
200 |
Q |
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||||||||||||||||||||||||| || ||||| ||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
238123 |
tgacaggggcttttgctcatggagctatttttttcattagggattacaatccggaacagaatgaggataatgtattggcaagaatgttagaccataaaga |
238024 |
T |
|
| Q |
201 |
agctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgt |
266 |
Q |
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|||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||| |||||||| |
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| T |
238023 |
agctatcatatctcatttaagttgggctagcctctttctaggattccataccttgggcctttatgt |
237958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 18013484 - 18013446
Alignment:
| Q |
51 |
tactcaagctgcgttatatactcatcatcaatacattgc |
89 |
Q |
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|
|||||||||||| ||||||| |||||||||||||||||| |
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| T |
18013484 |
tactcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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