View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0191_low_40 (Length: 244)
Name: NF0191_low_40
Description: NF0191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0191_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 2820017 - 2820109
Alignment:
| Q |
137 |
gcagtgctattctttggaatctctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtat |
229 |
Q |
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| T |
2820017 |
gcagtgctattctttggaatctctatcttctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtat |
2820109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 2827078 - 2827273
Alignment:
| Q |
21 |
gcgaacatataaatcaaaataagttttactcacaaaaatttattttccattctaaaagttatat-ctgcatatatgatagacttaatagttagtatttac |
119 |
Q |
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| T |
2827078 |
gcgaacatataaatcaaaatcagttttagtcacaaaaacatattttccattctaaaagttctatgctgaatatatcatagacttaata-------ttcac |
2827170 |
T |
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| Q |
120 |
caataannnnnnnnnnngcagtgctattctttggaatctctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccat |
219 |
Q |
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| T |
2827171 |
taataatttttttttt-gcagtgctattctttggaatatctaccttctttgagtttttgtgcattattctctatgcaatctacttccctaagttgaccat |
2827269 |
T |
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