View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0192_high_1 (Length: 831)
Name: NF0192_high_1
Description: NF0192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0192_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 39298860 - 39299171
Alignment:
| Q |
1 |
cttcaaccgcatgcgctgcagccttagttcaatccacggtcaacttcgtcgaataatgtgccgcagtcacccctacaacggtggccttatccttcaaatc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
39298860 |
cttcaacagcatgcgctgcagccttagttccatccacggtcaacttcgtcgaataatgtgccgcagtccaccctgccacggtggccttatccttcaaatc |
39298959 |
T |
|
| Q |
101 |
aaccgccactttgcttgcaacttccgcagcagtcttccctgtctctacagtaacatcctttgcctgaacaactgcagacttggctttctccgccacaggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39298960 |
aaccgccactttgcttgcaacttccgcagcagtcttccctgtctctacagtaacatcctttgcctgaacaactgcagacttggctttctccgccacaggg |
39299059 |
T |
|
| Q |
201 |
gtagcatattctgttgcagtttttgcagcgcttgaaacagtgtcttttgttgcttcataaccttgttgtgttttctcaagagttgcatctttggcttgtg |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39299060 |
gtaacatattctgttgcagtttttgcagcgcttgaaacagtgtcttttgttgcttcataaccttgttgtgttttctcaacagttgcatctttggcttgtg |
39299159 |
T |
|
| Q |
301 |
ctgctttctcca |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39299160 |
ctgctttctcca |
39299171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 703 - 824
Target Start/End: Original strand, 39299562 - 39299683
Alignment:
| Q |
703 |
cccacattgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctcggccacaacttgtcctgt |
802 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39299562 |
cccacatcgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctctgccacaacttgtcctgt |
39299661 |
T |
|
| Q |
803 |
tcccattcctctgttcatttct |
824 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39299662 |
tcccattcctctgttcatttct |
39299683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 504 - 612
Target Start/End: Original strand, 39299363 - 39299471
Alignment:
| Q |
504 |
tgttcagcaccactttttcccaacattgcaccttcatttccagcacccgctcttcctctttgctcagctacactctttcccaagattacaccttcatttt |
603 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39299363 |
tgttcagcagcactttttcccaacattgcaccttcatttccagcacccgctcttcctctttgctcagcaacactctttcccaagattacaccttcatttt |
39299462 |
T |
|
| Q |
604 |
caccaccaa |
612 |
Q |
| |
|
||||||||| |
|
|
| T |
39299463 |
caccaccaa |
39299471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 39299247 - 39299332
Alignment:
| Q |
388 |
catacctctcttgtgctgctgagattgcgtccatttcattttgttgtgcttggtttctatacttccctatctcttccaaagacatt |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39299247 |
catacctctcttgtgctgctgagattgcgtccatttcattttgttgtgcttggtttctatacttccctatctcttccaaagacatt |
39299332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 861 times since January 2019
Visitors: 1513