View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0192_low_3 (Length: 382)
Name: NF0192_low_3
Description: NF0192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0192_low_3 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 34155265 - 34155610
Alignment:
| Q |
1 |
caataattgtccatggattgatatttgatgaaacattggaacctcctgcttcaaaacctgaaacattaatttagaataataaaaataattaaatcacgaa |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34155265 |
caataattatccatggattgatatttgatgaaacattggaaccccctgcttcaaaacctgaaacattaatttagaataataaaaataattaaatcacgaa |
34155364 |
T |
|
| Q |
101 |
tttgtccttggttagaccttaacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaa |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34155365 |
tttgtccttggttagacctcaacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaa |
34155464 |
T |
|
| Q |
201 |
attagtgagataaactaatttgcaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttgatgagttaattgctgaagannnnnnn |
300 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
34155465 |
attagtgagataaactaatttacaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttt |
34155564 |
T |
|
| Q |
301 |
naataagtgacaatcaatatatgcctctattatccacaggttctgc |
346 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
34155565 |
taataagtgacaatcaatatatacctctattatccacaagttctgc |
34155610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 34168640 - 34168295
Alignment:
| Q |
1 |
caataattgtccatggattgatatttgatgaaacattggaacctcctgcttcaaaacctgaaacattaatttagaataataaaaataattaaatcacgaa |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34168640 |
caataattatccatggattgatatttgatgaaacattggaaccccctgcttcaaaacctgaaacattaatttagaataataaaaataattaaatcacgaa |
34168541 |
T |
|
| Q |
101 |
tttgtccttggttagaccttaacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaa |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34168540 |
tttgtccttggttagacctcaacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaa |
34168441 |
T |
|
| Q |
201 |
attagtgagataaactaatttgcaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttgatgagttaattgctgaagannnnnnn |
300 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
34168440 |
attagtgagataaactaatttacaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttt |
34168341 |
T |
|
| Q |
301 |
naataagtgacaatcaatatatgcctctattatccacaggttctgc |
346 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
34168340 |
taataagtgacaatcaatatatacctctattatccacaagttctgc |
34168295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 34208850 - 34208504
Alignment:
| Q |
1 |
caataattgtccatggattgatatttgatgaaacattggaacctcctgcttcaaaacctgaaacattaatttagaataataaaaataattaaatcacgaa |
100 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34208850 |
caataatagtccatagattaatatttgatgaaacattggaacctcctgcttcaaaacctcaaacattaatttagaataataaaaataattaaatcacgaa |
34208751 |
T |
|
| Q |
101 |
tttgtccttggttagaccttaacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaa |
200 |
Q |
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|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34208750 |
tttgtccttgattagacctcaacccatcaaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaa |
34208651 |
T |
|
| Q |
201 |
attagtgagataaactaatttgcaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttgatgagttaattgctgaaga-nnnnnn |
299 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
34208650 |
attagtgagataaactaatttacaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttt |
34208551 |
T |
|
| Q |
300 |
nnaataagtgacaatcaatatatgcctctattatccacaggttctgc |
346 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
34208550 |
ttaataagtgacaatcaatatatacctctattatccacaagttctgc |
34208504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 28962 - 28617
Alignment:
| Q |
1 |
caataattgtccatggattgatatttgatgaaacattggaacctcctgcttcaaaacctgaaacattaatttagaataataaaaataattaaatcacgaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962 |
caataattatccatggattgatatttgatgaaacattggaaccccctncttcaaaacctgaaacattaatttagaataataaaaataattaaatcacgaa |
28863 |
T |
|
| Q |
101 |
tttgtccttggttagaccttaacccatctaagagactttttgagtaaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaa |
200 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28862 |
tttgtccttggttagacctcaacccatctaagagactttttnantaaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaa |
28763 |
T |
|
| Q |
201 |
attagtgagataaactaatttgcaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttgatgagttaattgctgaagannnnnnn |
300 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
28762 |
attagtgagataaactaatttacaaaggaaatgtaagaaacatatctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttt |
28663 |
T |
|
| Q |
301 |
naataagtgacaatcaatatatgcctctattatccacaggttctgc |
346 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
28662 |
taataagtgacaatcaatatatacctctattatccacaagttctgc |
28617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 145 - 346
Target Start/End: Complemental strand, 35319 - 35118
Alignment:
| Q |
145 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35319 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
35220 |
T |
|
| Q |
245 |
tctctaattcggtcaccaaaattagtgttgatgagttaattgctgaagannnnnnnnaataagtgacaatcaatatatgcctctattatccacaggttct |
344 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
35219 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatatatacctctattatccacaagttct |
35120 |
T |
|
| Q |
345 |
gc |
346 |
Q |
| |
|
|| |
|
|
| T |
35119 |
gc |
35118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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